Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20210

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20205 and BWI76_RS20210 are separated by 87 nucleotidesBWI76_RS20210 and BWI76_RS20215 are separated by 53 nucleotides BWI76_RS20205: BWI76_RS20205 - aminotransferase AlaT, at 4,234,466 to 4,235,683 _RS20205 BWI76_RS20210: BWI76_RS20210 - 5'-deoxynucleotidase, at 4,235,771 to 4,236,370 _RS20210 BWI76_RS20215: BWI76_RS20215 - transcriptional regulator, at 4,236,424 to 4,238,256 _RS20215 Position (kb) 4235 4236 4237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4234.908 kb on + strand, within BWI76_RS20205at 4235.130 kb on - strand, within BWI76_RS20205at 4235.207 kb on + strand, within BWI76_RS20205at 4235.291 kb on - strand, within BWI76_RS20205at 4235.390 kb on - strand, within BWI76_RS20205at 4235.442 kb on - strand, within BWI76_RS20205at 4235.459 kb on + strand, within BWI76_RS20205at 4235.459 kb on + strand, within BWI76_RS20205at 4235.757 kb on + strandat 4235.757 kb on + strandat 4235.872 kb on - strand, within BWI76_RS20210at 4235.935 kb on + strand, within BWI76_RS20210at 4235.943 kb on - strand, within BWI76_RS20210at 4235.943 kb on - strand, within BWI76_RS20210at 4235.943 kb on - strand, within BWI76_RS20210at 4236.053 kb on - strand, within BWI76_RS20210at 4236.285 kb on + strand, within BWI76_RS20210at 4236.290 kb on + strand, within BWI76_RS20210at 4236.390 kb on + strandat 4236.458 kb on + strandat 4236.619 kb on - strand, within BWI76_RS20215at 4236.684 kb on - strand, within BWI76_RS20215at 4236.859 kb on + strand, within BWI76_RS20215at 4237.010 kb on - strand, within BWI76_RS20215at 4237.167 kb on - strand, within BWI76_RS20215at 4237.265 kb on + strand, within BWI76_RS20215at 4237.357 kb on - strand, within BWI76_RS20215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
4,234,908 + BWI76_RS20205 0.36 +0.1
4,235,130 - BWI76_RS20205 0.55 -2.8
4,235,207 + BWI76_RS20205 0.61 -0.9
4,235,291 - BWI76_RS20205 0.68 -1.5
4,235,390 - BWI76_RS20205 0.76 -0.2
4,235,442 - BWI76_RS20205 0.80 -1.6
4,235,459 + BWI76_RS20205 0.82 -1.4
4,235,459 + BWI76_RS20205 0.82 -0.0
4,235,757 + +0.5
4,235,757 + -0.0
4,235,872 - BWI76_RS20210 0.17 -0.7
4,235,935 + BWI76_RS20210 0.27 -0.9
4,235,943 - BWI76_RS20210 0.29 -0.3
4,235,943 - BWI76_RS20210 0.29 -1.2
4,235,943 - BWI76_RS20210 0.29 -0.5
4,236,053 - BWI76_RS20210 0.47 +0.0
4,236,285 + BWI76_RS20210 0.86 -1.1
4,236,290 + BWI76_RS20210 0.86 -0.4
4,236,390 + +0.3
4,236,458 + +0.8
4,236,619 - BWI76_RS20215 0.11 -0.6
4,236,684 - BWI76_RS20215 0.14 +1.0
4,236,859 + BWI76_RS20215 0.24 +0.2
4,237,010 - BWI76_RS20215 0.32 +2.0
4,237,167 - BWI76_RS20215 0.41 +0.2
4,237,265 + BWI76_RS20215 0.46 -0.4
4,237,357 - BWI76_RS20215 0.51 -0.3

Or see this region's nucleotide sequence