Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20200

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20190 and BWI76_RS20195 overlap by 23 nucleotidesBWI76_RS20195 and BWI76_RS20200 are separated by 463 nucleotidesBWI76_RS20200 and BWI76_RS20205 are separated by 889 nucleotides BWI76_RS20190: BWI76_RS20190 - NADH-quinone oxidoreductase subunit A, at 4,231,552 to 4,231,998 _RS20190 BWI76_RS20195: BWI76_RS20195 - hypothetical protein, at 4,231,976 to 4,232,186 _RS20195 BWI76_RS20200: BWI76_RS20200 - transcriptional regulator LrhA, at 4,232,650 to 4,233,576 _RS20200 BWI76_RS20205: BWI76_RS20205 - aminotransferase AlaT, at 4,234,466 to 4,235,683 _RS20205 Position (kb) 4232 4233 4234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4231.657 kb on - strand, within BWI76_RS20190at 4231.908 kb on + strand, within BWI76_RS20190at 4231.926 kb on - strand, within BWI76_RS20190at 4232.281 kb on - strandat 4232.334 kb on - strandat 4232.434 kb on - strandat 4232.691 kb on - strandat 4232.705 kb on - strandat 4232.874 kb on + strand, within BWI76_RS20200at 4232.962 kb on - strand, within BWI76_RS20200at 4232.962 kb on - strand, within BWI76_RS20200at 4233.128 kb on - strand, within BWI76_RS20200at 4233.134 kb on + strand, within BWI76_RS20200at 4233.135 kb on - strand, within BWI76_RS20200at 4233.264 kb on + strand, within BWI76_RS20200at 4233.315 kb on - strand, within BWI76_RS20200at 4233.434 kb on - strand, within BWI76_RS20200at 4233.464 kb on + strand, within BWI76_RS20200at 4233.470 kb on - strand, within BWI76_RS20200at 4233.472 kb on - strand, within BWI76_RS20200at 4233.532 kb on - strandat 4233.532 kb on - strandat 4233.532 kb on - strandat 4233.594 kb on - strandat 4233.594 kb on - strandat 4233.594 kb on - strandat 4233.601 kb on + strandat 4233.601 kb on + strandat 4233.601 kb on + strandat 4233.601 kb on + strandat 4233.601 kb on + strandat 4233.601 kb on + strandat 4233.604 kb on - strandat 4233.604 kb on - strandat 4233.604 kb on - strandat 4233.604 kb on - strandat 4233.604 kb on - strandat 4233.609 kb on - strandat 4233.614 kb on - strandat 4233.615 kb on + strandat 4233.634 kb on - strandat 4233.635 kb on - strandat 4233.646 kb on + strandat 4233.646 kb on + strandat 4233.646 kb on + strandat 4233.646 kb on + strandat 4233.646 kb on + strandat 4233.646 kb on + strandat 4233.647 kb on + strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.654 kb on - strandat 4233.675 kb on - strandat 4233.675 kb on - strandat 4233.675 kb on - strandat 4233.680 kb on - strandat 4233.721 kb on + strandat 4233.724 kb on - strandat 4233.724 kb on - strandat 4233.724 kb on - strandat 4233.725 kb on - strandat 4233.735 kb on - strandat 4233.735 kb on - strandat 4233.740 kb on + strandat 4233.770 kb on - strandat 4233.777 kb on - strandat 4233.828 kb on + strandat 4233.838 kb on - strandat 4233.840 kb on + strandat 4233.840 kb on + strandat 4233.840 kb on + strandat 4233.848 kb on - strandat 4233.848 kb on - strandat 4233.862 kb on + strandat 4233.864 kb on - strandat 4233.905 kb on + strandat 4233.930 kb on + strandat 4233.934 kb on + strandat 4233.938 kb on - strandat 4233.940 kb on + strandat 4233.940 kb on + strandat 4233.940 kb on + strandat 4233.942 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.948 kb on - strandat 4233.960 kb on + strandat 4233.968 kb on - strandat 4234.002 kb on - strandat 4234.004 kb on + strandat 4234.004 kb on + strandat 4234.004 kb on + strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.012 kb on - strandat 4234.086 kb on - strandat 4234.086 kb on - strandat 4234.086 kb on - strandat 4234.153 kb on - strandat 4234.177 kb on - strandat 4234.377 kb on - strandat 4234.402 kb on + strandat 4234.404 kb on + strandat 4234.404 kb on + strandat 4234.410 kb on - strandat 4234.414 kb on + strandat 4234.442 kb on - strandat 4234.460 kb on + strandat 4234.468 kb on - strandat 4234.468 kb on - strandat 4234.468 kb on - strandat 4234.509 kb on - strandat 4234.512 kb on - strandat 4234.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,231,657 - BWI76_RS20190 0.23 -0.9
4,231,908 + BWI76_RS20190 0.80 -0.7
4,231,926 - BWI76_RS20190 0.84 -0.2
4,232,281 - -0.3
4,232,334 - +0.1
4,232,434 - +0.1
4,232,691 - -0.3
4,232,705 - +0.3
4,232,874 + BWI76_RS20200 0.24 +0.3
4,232,962 - BWI76_RS20200 0.34 +0.4
4,232,962 - BWI76_RS20200 0.34 -0.9
4,233,128 - BWI76_RS20200 0.52 +0.7
4,233,134 + BWI76_RS20200 0.52 -0.2
4,233,135 - BWI76_RS20200 0.52 -0.6
4,233,264 + BWI76_RS20200 0.66 +0.3
4,233,315 - BWI76_RS20200 0.72 +0.9
4,233,434 - BWI76_RS20200 0.85 -1.0
4,233,464 + BWI76_RS20200 0.88 +0.4
4,233,470 - BWI76_RS20200 0.88 -0.3
4,233,472 - BWI76_RS20200 0.89 +1.4
4,233,532 - +0.1
4,233,532 - -1.0
4,233,532 - +0.1
4,233,594 - -0.7
4,233,594 - -2.2
4,233,594 - +0.0
4,233,601 + +0.4
4,233,601 + -1.0
4,233,601 + -1.6
4,233,601 + +0.1
4,233,601 + -0.7
4,233,601 + +0.7
4,233,604 - +0.9
4,233,604 - -0.0
4,233,604 - -1.5
4,233,604 - -2.2
4,233,604 - +0.3
4,233,609 - +1.3
4,233,614 - +0.2
4,233,615 + +0.2
4,233,634 - +0.2
4,233,635 - -0.2
4,233,646 + -0.8
4,233,646 + -0.1
4,233,646 + +0.9
4,233,646 + +0.7
4,233,646 + +0.0
4,233,646 + -0.7
4,233,647 + +0.4
4,233,654 - -1.1
4,233,654 - +1.3
4,233,654 - +1.1
4,233,654 - -1.8
4,233,654 - +0.2
4,233,654 - +0.3
4,233,654 - -0.5
4,233,654 - -0.2
4,233,654 - -0.8
4,233,654 - -0.7
4,233,654 - +0.4
4,233,654 - +0.1
4,233,654 - -0.3
4,233,654 - +0.5
4,233,675 - +0.2
4,233,675 - -1.7
4,233,675 - +1.8
4,233,680 - +0.1
4,233,721 + +0.3
4,233,724 - +0.3
4,233,724 - -0.6
4,233,724 - +1.3
4,233,725 - -0.1
4,233,735 - +0.4
4,233,735 - -0.8
4,233,740 + +1.3
4,233,770 - +0.4
4,233,777 - -1.6
4,233,828 + -0.4
4,233,838 - -0.6
4,233,840 + +0.5
4,233,840 + -0.1
4,233,840 + +0.0
4,233,848 - +0.3
4,233,848 - -0.4
4,233,862 + -0.5
4,233,864 - -0.1
4,233,905 + +0.5
4,233,930 + -0.6
4,233,934 + -0.5
4,233,938 - -0.6
4,233,940 + +1.0
4,233,940 + +0.2
4,233,940 + -2.9
4,233,942 - +0.6
4,233,948 - +0.7
4,233,948 - +0.7
4,233,948 - +0.2
4,233,948 - -0.2
4,233,948 - -0.6
4,233,948 - -0.5
4,233,948 - -0.3
4,233,960 + +0.1
4,233,968 - -0.7
4,234,002 - -1.6
4,234,004 + -1.8
4,234,004 + +4.4
4,234,004 + +0.3
4,234,012 - -0.4
4,234,012 - -0.0
4,234,012 - +1.6
4,234,012 - +0.7
4,234,012 - -0.2
4,234,012 - -0.4
4,234,012 - +0.1
4,234,086 - -0.6
4,234,086 - +0.0
4,234,086 - +0.4
4,234,153 - +1.1
4,234,177 - +1.9
4,234,377 - +0.8
4,234,402 + +0.2
4,234,404 + -0.4
4,234,404 + +0.7
4,234,410 - -0.0
4,234,414 + -0.2
4,234,442 - -1.1
4,234,460 + -0.9
4,234,468 - +1.4
4,234,468 - -1.1
4,234,468 - -1.1
4,234,509 - -1.3
4,234,512 - +0.4
4,234,534 - +0.2

Or see this region's nucleotide sequence