Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07260

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07250 and BWI76_RS07255 overlap by 4 nucleotidesBWI76_RS07255 and BWI76_RS07260 are separated by 17 nucleotidesBWI76_RS07260 and BWI76_RS07265 are separated by 27 nucleotidesBWI76_RS07265 and BWI76_RS07270 overlap by 8 nucleotides BWI76_RS07250: BWI76_RS07250 - Zn-dependent hydrolase, at 1,526,020 to 1,527,261 _RS07250 BWI76_RS07255: BWI76_RS07255 - hypothetical protein, at 1,527,258 to 1,527,740 _RS07255 BWI76_RS07260: BWI76_RS07260 - branched chain amino acid ABC transporter substrate-binding protein, at 1,527,758 to 1,528,915 _RS07260 BWI76_RS07265: BWI76_RS07265 - ABC transporter ATP-binding protein, at 1,528,943 to 1,529,662 _RS07265 BWI76_RS07270: BWI76_RS07270 - ABC transporter ATP-binding protein, at 1,529,655 to 1,530,422 _RS07270 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -2 -1 0 1at 1527.418 kb on - strand, within BWI76_RS07255at 1527.480 kb on + strand, within BWI76_RS07255at 1527.639 kb on + strand, within BWI76_RS07255at 1527.761 kb on - strandat 1527.888 kb on - strand, within BWI76_RS07260at 1528.023 kb on + strand, within BWI76_RS07260at 1528.048 kb on - strand, within BWI76_RS07260at 1528.503 kb on + strand, within BWI76_RS07260at 1528.508 kb on + strand, within BWI76_RS07260at 1528.970 kb on - strandat 1529.017 kb on + strand, within BWI76_RS07265at 1529.220 kb on - strand, within BWI76_RS07265at 1529.433 kb on - strand, within BWI76_RS07265at 1529.539 kb on - strand, within BWI76_RS07265at 1529.596 kb on - strandat 1529.596 kb on - strandat 1529.890 kb on + strand, within BWI76_RS07270

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,527,418 - BWI76_RS07255 0.33 +0.7
1,527,480 + BWI76_RS07255 0.46 -0.2
1,527,639 + BWI76_RS07255 0.79 -0.1
1,527,761 - +0.3
1,527,888 - BWI76_RS07260 0.11 +1.5
1,528,023 + BWI76_RS07260 0.23 -0.1
1,528,048 - BWI76_RS07260 0.25 +1.5
1,528,503 + BWI76_RS07260 0.64 +0.8
1,528,508 + BWI76_RS07260 0.65 +0.5
1,528,970 - -0.5
1,529,017 + BWI76_RS07265 0.10 +0.3
1,529,220 - BWI76_RS07265 0.38 +0.2
1,529,433 - BWI76_RS07265 0.68 +0.1
1,529,539 - BWI76_RS07265 0.83 -2.3
1,529,596 - -1.0
1,529,596 - +0.6
1,529,890 + BWI76_RS07270 0.31 -0.3

Or see this region's nucleotide sequence