Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33415 and AZOBR_RS33420 overlap by 8 nucleotides AZOBR_RS33420 and AZOBR_RS33425 overlap by 4 nucleotides AZOBR_RS33425 and AZOBR_RS33430 are separated by 505 nucleotides AZOBR_RS33430 and AZOBR_RS33435 are separated by 247 nucleotides
AZOBR_RS33415: AZOBR_RS33415 - dTDP-glucose 4 6-dehydratase, at 7,398 to 8,480
_RS33415
AZOBR_RS33420: AZOBR_RS33420 - dTDP-4-dehydrorhamnose reductase, at 8,473 to 9,420
_RS33420
AZOBR_RS33425: AZOBR_RS33425 - glucose-1-phosphate thymidylyltransferase, at 9,417 to 10,283
_RS33425
AZOBR_RS33430: AZOBR_RS33430 - hypothetical protein, at 10,789 to 11,013
_RS33430
AZOBR_RS33435: AZOBR_RS33435 - hypothetical protein, at 11,261 to 12,880
_RS33435
Position (kb) 9
10
11 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 8.422 kb on - strand at 8.803 kb on + strand, within AZOBR_RS33420 at 8.803 kb on + strand, within AZOBR_RS33420 at 8.803 kb on + strand, within AZOBR_RS33420 at 8.803 kb on + strand, within AZOBR_RS33420 at 8.803 kb on + strand, within AZOBR_RS33420 at 8.804 kb on - strand, within AZOBR_RS33420 at 9.329 kb on - strand at 9.519 kb on + strand, within AZOBR_RS33425 at 9.519 kb on + strand, within AZOBR_RS33425 at 9.520 kb on - strand, within AZOBR_RS33425 at 9.522 kb on + strand, within AZOBR_RS33425 at 9.523 kb on - strand, within AZOBR_RS33425 at 9.820 kb on - strand, within AZOBR_RS33425 at 9.843 kb on + strand, within AZOBR_RS33425 at 9.936 kb on + strand, within AZOBR_RS33425 at 9.942 kb on + strand, within AZOBR_RS33425 at 10.026 kb on + strand, within AZOBR_RS33425 at 10.257 kb on + strand at 10.258 kb on - strand at 10.258 kb on - strand at 10.345 kb on + strand at 10.554 kb on + strand at 10.554 kb on + strand at 10.554 kb on + strand at 10.554 kb on + strand at 10.555 kb on - strand at 10.555 kb on - strand at 11.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 8,422 - +0.6 8,803 + AZOBR_RS33420 0.35 +2.4 8,803 + AZOBR_RS33420 0.35 +2.0 8,803 + AZOBR_RS33420 0.35 +1.6 8,803 + AZOBR_RS33420 0.35 +2.3 8,803 + AZOBR_RS33420 0.35 +2.3 8,804 - AZOBR_RS33420 0.35 +1.9 9,329 - +2.1 9,519 + AZOBR_RS33425 0.12 +1.1 9,519 + AZOBR_RS33425 0.12 -0.8 9,520 - AZOBR_RS33425 0.12 +1.2 9,522 + AZOBR_RS33425 0.12 +0.5 9,523 - AZOBR_RS33425 0.12 -2.9 9,820 - AZOBR_RS33425 0.46 +1.9 9,843 + AZOBR_RS33425 0.49 +1.3 9,936 + AZOBR_RS33425 0.60 +1.1 9,942 + AZOBR_RS33425 0.61 +0.2 10,026 + AZOBR_RS33425 0.70 +1.9 10,257 + -0.1 10,258 - +1.8 10,258 - -0.3 10,345 + -2.5 10,554 + +0.4 10,554 + +0.1 10,554 + -0.8 10,554 + +0.3 10,555 - +0.3 10,555 - +1.1 11,026 + -0.1
Or see this region's nucleotide sequence