Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20230 and AZOBR_RS20235 are separated by 448 nucleotides AZOBR_RS20235 and AZOBR_RS20240 are separated by 91 nucleotides AZOBR_RS20240 and AZOBR_RS20245 are separated by 163 nucleotides
AZOBR_RS20230: AZOBR_RS20230 - acyl-CoA dehydrogenase, at 1,307,224 to 1,309,014
_RS20230
AZOBR_RS20235: AZOBR_RS20235 - transcriptional regulator, at 1,309,463 to 1,310,107
_RS20235
AZOBR_RS20240: AZOBR_RS20240 - histidine kinase, at 1,310,199 to 1,310,633
_RS20240
AZOBR_RS20245: AZOBR_RS20245 - membrane protein, at 1,310,797 to 1,311,495
_RS20245
Position (kb)
1309
1310
1311 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1308.508 kb on + strand, within AZOBR_RS20230 at 1308.508 kb on + strand, within AZOBR_RS20230 at 1308.508 kb on + strand, within AZOBR_RS20230 at 1308.509 kb on - strand, within AZOBR_RS20230 at 1308.509 kb on - strand, within AZOBR_RS20230 at 1308.538 kb on + strand, within AZOBR_RS20230 at 1308.538 kb on + strand, within AZOBR_RS20230 at 1308.539 kb on - strand, within AZOBR_RS20230 at 1308.539 kb on - strand, within AZOBR_RS20230 at 1308.788 kb on - strand, within AZOBR_RS20230 at 1308.788 kb on - strand, within AZOBR_RS20230 at 1308.788 kb on - strand, within AZOBR_RS20230 at 1308.919 kb on + strand at 1308.919 kb on + strand at 1309.035 kb on - strand at 1309.035 kb on - strand at 1309.059 kb on - strand at 1309.146 kb on - strand at 1309.155 kb on + strand at 1309.242 kb on - strand at 1309.327 kb on - strand at 1309.348 kb on + strand at 1309.349 kb on - strand at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.604 kb on + strand, within AZOBR_RS20235 at 1309.763 kb on + strand, within AZOBR_RS20235 at 1309.764 kb on - strand, within AZOBR_RS20235 at 1309.832 kb on + strand, within AZOBR_RS20235 at 1309.833 kb on - strand, within AZOBR_RS20235 at 1310.136 kb on - strand at 1310.136 kb on - strand at 1310.136 kb on - strand at 1310.798 kb on + strand at 1310.991 kb on - strand, within AZOBR_RS20245 at 1310.991 kb on - strand, within AZOBR_RS20245 at 1311.062 kb on + strand, within AZOBR_RS20245 at 1311.062 kb on + strand, within AZOBR_RS20245 at 1311.062 kb on + strand, within AZOBR_RS20245 at 1311.083 kb on + strand, within AZOBR_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 1,308,508 + AZOBR_RS20230 0.72 -0.7 1,308,508 + AZOBR_RS20230 0.72 -0.9 1,308,508 + AZOBR_RS20230 0.72 -2.9 1,308,509 - AZOBR_RS20230 0.72 -1.2 1,308,509 - AZOBR_RS20230 0.72 -0.8 1,308,538 + AZOBR_RS20230 0.73 -0.8 1,308,538 + AZOBR_RS20230 0.73 -1.4 1,308,539 - AZOBR_RS20230 0.73 +0.8 1,308,539 - AZOBR_RS20230 0.73 -0.1 1,308,788 - AZOBR_RS20230 0.87 -1.2 1,308,788 - AZOBR_RS20230 0.87 -1.8 1,308,788 - AZOBR_RS20230 0.87 +0.3 1,308,919 + -0.2 1,308,919 + -0.3 1,309,035 - +0.6 1,309,035 - +0.3 1,309,059 - -0.1 1,309,146 - +0.2 1,309,155 + -0.7 1,309,242 - -1.5 1,309,327 - -1.7 1,309,348 + -0.1 1,309,349 - -0.8 1,309,604 + AZOBR_RS20235 0.22 -1.2 1,309,604 + AZOBR_RS20235 0.22 -0.2 1,309,604 + AZOBR_RS20235 0.22 +0.2 1,309,604 + AZOBR_RS20235 0.22 +0.7 1,309,604 + AZOBR_RS20235 0.22 -0.8 1,309,604 + AZOBR_RS20235 0.22 -1.2 1,309,763 + AZOBR_RS20235 0.47 -0.9 1,309,764 - AZOBR_RS20235 0.47 -0.0 1,309,832 + AZOBR_RS20235 0.57 +1.1 1,309,833 - AZOBR_RS20235 0.57 -0.7 1,310,136 - +0.4 1,310,136 - +0.2 1,310,136 - +1.2 1,310,798 + -2.2 1,310,991 - AZOBR_RS20245 0.28 -0.1 1,310,991 - AZOBR_RS20245 0.28 -0.5 1,311,062 + AZOBR_RS20245 0.38 -1.4 1,311,062 + AZOBR_RS20245 0.38 -1.0 1,311,062 + AZOBR_RS20245 0.38 -0.7 1,311,083 + AZOBR_RS20245 0.41 -0.6
Or see this region's nucleotide sequence