Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19710

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19705 and AZOBR_RS19710 are separated by 162 nucleotides AZOBR_RS19705: AZOBR_RS19705 - permease, at 1,191,283 to 1,193,064 _RS19705 AZOBR_RS19710: AZOBR_RS19710 - 2 5-didehydrogluconate reductase, at 1,193,227 to 1,194,051 _RS19710 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -2 -1 0 1at 1192.975 kb on + strandat 1193.063 kb on - strandat 1193.063 kb on - strandat 1193.158 kb on - strandat 1193.158 kb on - strandat 1193.501 kb on + strand, within AZOBR_RS19710at 1193.501 kb on + strand, within AZOBR_RS19710at 1193.501 kb on + strand, within AZOBR_RS19710at 1193.504 kb on + strand, within AZOBR_RS19710at 1193.505 kb on - strand, within AZOBR_RS19710at 1193.505 kb on - strand, within AZOBR_RS19710at 1193.505 kb on - strand, within AZOBR_RS19710at 1193.564 kb on + strand, within AZOBR_RS19710at 1193.573 kb on + strand, within AZOBR_RS19710at 1193.760 kb on - strand, within AZOBR_RS19710at 1193.760 kb on - strand, within AZOBR_RS19710at 1193.819 kb on + strand, within AZOBR_RS19710at 1193.819 kb on + strand, within AZOBR_RS19710at 1193.819 kb on + strand, within AZOBR_RS19710at 1193.820 kb on - strand, within AZOBR_RS19710at 1193.820 kb on - strand, within AZOBR_RS19710at 1193.912 kb on + strand, within AZOBR_RS19710at 1193.912 kb on + strand, within AZOBR_RS19710at 1193.912 kb on + strand, within AZOBR_RS19710at 1193.913 kb on - strand, within AZOBR_RS19710at 1194.091 kb on - strandat 1194.091 kb on - strandat 1194.091 kb on - strandat 1194.091 kb on - strandat 1194.640 kb on - strandat 1195.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days
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1,192,975 + -0.6
1,193,063 - -0.9
1,193,063 - +0.3
1,193,158 - -0.5
1,193,158 - +0.1
1,193,501 + AZOBR_RS19710 0.33 +0.4
1,193,501 + AZOBR_RS19710 0.33 +0.4
1,193,501 + AZOBR_RS19710 0.33 +0.2
1,193,504 + AZOBR_RS19710 0.34 -0.0
1,193,505 - AZOBR_RS19710 0.34 +0.4
1,193,505 - AZOBR_RS19710 0.34 +0.7
1,193,505 - AZOBR_RS19710 0.34 +0.1
1,193,564 + AZOBR_RS19710 0.41 +1.1
1,193,573 + AZOBR_RS19710 0.42 +0.4
1,193,760 - AZOBR_RS19710 0.65 +0.3
1,193,760 - AZOBR_RS19710 0.65 +0.1
1,193,819 + AZOBR_RS19710 0.72 +0.8
1,193,819 + AZOBR_RS19710 0.72 -0.0
1,193,819 + AZOBR_RS19710 0.72 -2.4
1,193,820 - AZOBR_RS19710 0.72 +0.2
1,193,820 - AZOBR_RS19710 0.72 +0.2
1,193,912 + AZOBR_RS19710 0.83 +0.5
1,193,912 + AZOBR_RS19710 0.83 -0.6
1,193,912 + AZOBR_RS19710 0.83 -0.2
1,193,913 - AZOBR_RS19710 0.83 -0.1
1,194,091 - +0.1
1,194,091 - +0.7
1,194,091 - +0.8
1,194,091 - +0.4
1,194,640 - -1.4
1,195,033 - +0.9

Or see this region's nucleotide sequence