Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16610 and AZOBR_RS16615 are separated by 156 nucleotides AZOBR_RS16615 and AZOBR_RS16620 overlap by 4 nucleotides AZOBR_RS16620 and AZOBR_RS16625 are separated by 403 nucleotides
AZOBR_RS16610: AZOBR_RS16610 - fused trehalose maltokinase and malto-oligosyltrehalose trehalohydrolase, at 478,204 to 483,822
_RS16610
AZOBR_RS16615: AZOBR_RS16615 - alpha-amylase, at 483,979 to 486,723
_RS16615
AZOBR_RS16620: AZOBR_RS16620 - hypothetical protein, at 486,720 to 487,208
_RS16620
AZOBR_RS16625: AZOBR_RS16625 - regulator, at 487,612 to 488,097
_RS16625
Position (kb) 483
484
485
486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 483.994 kb on + strand at 483.995 kb on - strand at 483.995 kb on - strand at 483.995 kb on - strand at 484.052 kb on - strand at 484.081 kb on + strand at 484.081 kb on + strand at 484.093 kb on + strand at 484.093 kb on + strand at 484.126 kb on + strand at 484.325 kb on - strand, within AZOBR_RS16615 at 484.474 kb on + strand, within AZOBR_RS16615 at 484.475 kb on - strand, within AZOBR_RS16615 at 484.769 kb on - strand, within AZOBR_RS16615 at 484.942 kb on + strand, within AZOBR_RS16615 at 484.942 kb on + strand, within AZOBR_RS16615 at 484.957 kb on + strand, within AZOBR_RS16615 at 484.958 kb on - strand, within AZOBR_RS16615 at 484.996 kb on + strand, within AZOBR_RS16615 at 484.996 kb on + strand, within AZOBR_RS16615 at 484.996 kb on + strand, within AZOBR_RS16615 at 484.996 kb on + strand, within AZOBR_RS16615 at 484.997 kb on - strand, within AZOBR_RS16615 at 484.997 kb on - strand, within AZOBR_RS16615 at 485.071 kb on + strand, within AZOBR_RS16615 at 485.130 kb on + strand, within AZOBR_RS16615 at 485.131 kb on - strand, within AZOBR_RS16615 at 485.356 kb on + strand, within AZOBR_RS16615 at 485.356 kb on + strand, within AZOBR_RS16615 at 485.356 kb on + strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.357 kb on - strand, within AZOBR_RS16615 at 485.456 kb on - strand, within AZOBR_RS16615 at 485.557 kb on + strand, within AZOBR_RS16615 at 485.558 kb on - strand, within AZOBR_RS16615 at 485.602 kb on + strand, within AZOBR_RS16615 at 485.602 kb on + strand, within AZOBR_RS16615 at 485.603 kb on - strand, within AZOBR_RS16615 at 485.603 kb on - strand, within AZOBR_RS16615 at 485.609 kb on - strand, within AZOBR_RS16615 at 485.894 kb on + strand, within AZOBR_RS16615 at 485.896 kb on + strand, within AZOBR_RS16615 at 485.896 kb on + strand, within AZOBR_RS16615 at 485.905 kb on + strand, within AZOBR_RS16615 at 485.905 kb on + strand, within AZOBR_RS16615 at 485.906 kb on - strand, within AZOBR_RS16615 at 485.906 kb on - strand, within AZOBR_RS16615 at 485.906 kb on - strand, within AZOBR_RS16615 at 486.070 kb on + strand, within AZOBR_RS16615 at 486.071 kb on - strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.238 kb on + strand, within AZOBR_RS16615 at 486.239 kb on - strand, within AZOBR_RS16615 at 486.301 kb on + strand, within AZOBR_RS16615 at 486.301 kb on + strand, within AZOBR_RS16615 at 486.301 kb on + strand, within AZOBR_RS16615 at 486.454 kb on + strand at 487.084 kb on - strand, within AZOBR_RS16620 at 487.084 kb on - strand, within AZOBR_RS16620 at 487.288 kb on + strand at 487.288 kb on + strand at 487.289 kb on - strand at 487.568 kb on - strand at 487.569 kb on - strand at 487.574 kb on + strand at 487.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 483,994 + +0.8 483,995 - +1.6 483,995 - +0.1 483,995 - -0.5 484,052 - +0.1 484,081 + -0.1 484,081 + -0.3 484,093 + -0.1 484,093 + -0.0 484,126 + -0.5 484,325 - AZOBR_RS16615 0.13 +0.6 484,474 + AZOBR_RS16615 0.18 +0.6 484,475 - AZOBR_RS16615 0.18 -0.2 484,769 - AZOBR_RS16615 0.29 +0.6 484,942 + AZOBR_RS16615 0.35 -1.0 484,942 + AZOBR_RS16615 0.35 -0.5 484,957 + AZOBR_RS16615 0.36 +0.6 484,958 - AZOBR_RS16615 0.36 +0.1 484,996 + AZOBR_RS16615 0.37 -0.3 484,996 + AZOBR_RS16615 0.37 +0.4 484,996 + AZOBR_RS16615 0.37 +0.3 484,996 + AZOBR_RS16615 0.37 -0.1 484,997 - AZOBR_RS16615 0.37 -0.7 484,997 - AZOBR_RS16615 0.37 +0.5 485,071 + AZOBR_RS16615 0.40 +0.4 485,130 + AZOBR_RS16615 0.42 -1.8 485,131 - AZOBR_RS16615 0.42 -0.1 485,356 + AZOBR_RS16615 0.50 -0.0 485,356 + AZOBR_RS16615 0.50 +0.4 485,356 + AZOBR_RS16615 0.50 +0.3 485,357 - AZOBR_RS16615 0.50 +0.6 485,357 - AZOBR_RS16615 0.50 -0.2 485,357 - AZOBR_RS16615 0.50 +1.7 485,357 - AZOBR_RS16615 0.50 +1.3 485,357 - AZOBR_RS16615 0.50 +1.0 485,357 - AZOBR_RS16615 0.50 +0.1 485,456 - AZOBR_RS16615 0.54 +0.7 485,557 + AZOBR_RS16615 0.57 -0.6 485,558 - AZOBR_RS16615 0.58 +0.7 485,602 + AZOBR_RS16615 0.59 -0.5 485,602 + AZOBR_RS16615 0.59 +0.2 485,603 - AZOBR_RS16615 0.59 +0.4 485,603 - AZOBR_RS16615 0.59 +0.5 485,609 - AZOBR_RS16615 0.59 -0.3 485,894 + AZOBR_RS16615 0.70 -1.2 485,896 + AZOBR_RS16615 0.70 -1.8 485,896 + AZOBR_RS16615 0.70 +0.3 485,905 + AZOBR_RS16615 0.70 -0.7 485,905 + AZOBR_RS16615 0.70 +0.7 485,906 - AZOBR_RS16615 0.70 +0.5 485,906 - AZOBR_RS16615 0.70 +1.0 485,906 - AZOBR_RS16615 0.70 +0.3 486,070 + AZOBR_RS16615 0.76 -2.0 486,071 - AZOBR_RS16615 0.76 -1.2 486,238 + AZOBR_RS16615 0.82 +0.8 486,238 + AZOBR_RS16615 0.82 -0.5 486,238 + AZOBR_RS16615 0.82 +0.7 486,238 + AZOBR_RS16615 0.82 +0.2 486,238 + AZOBR_RS16615 0.82 +0.7 486,238 + AZOBR_RS16615 0.82 +0.8 486,239 - AZOBR_RS16615 0.82 -0.1 486,301 + AZOBR_RS16615 0.85 +0.3 486,301 + AZOBR_RS16615 0.85 -0.0 486,301 + AZOBR_RS16615 0.85 +0.4 486,454 + +0.7 487,084 - AZOBR_RS16620 0.74 -0.8 487,084 - AZOBR_RS16620 0.74 -1.6 487,288 + -0.1 487,288 + +0.2 487,289 - -0.2 487,568 - +0.4 487,569 - -0.0 487,574 + -0.5 487,574 + -0.9
Or see this region's nucleotide sequence