Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25480 and AO353_25485 are separated by 104 nucleotides AO353_25485 and AO353_25490 are separated by 120 nucleotides AO353_25490 and AO353_25495 overlap by 23 nucleotides
AO353_25480: AO353_25480 - multidrug transporter, at 5,617,829 to 5,619,229
_25480
AO353_25485: AO353_25485 - XRE family transcriptional regulator, at 5,619,334 to 5,620,023
_25485
AO353_25490: AO353_25490 - transcriptional regulator, at 5,620,144 to 5,620,836
_25490
AO353_25495: AO353_25495 - histidine kinase, at 5,620,814 to 5,622,187
_25495
Position (kb) 5619
5620
5621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5618.642 kb on + strand, within AO353_25480 at 5618.642 kb on + strand, within AO353_25480 at 5618.642 kb on + strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.716 kb on - strand, within AO353_25480 at 5618.716 kb on - strand, within AO353_25480 at 5618.838 kb on + strand, within AO353_25480 at 5618.838 kb on + strand, within AO353_25480 at 5618.839 kb on - strand, within AO353_25480 at 5618.881 kb on - strand, within AO353_25480 at 5618.884 kb on + strand, within AO353_25480 at 5618.885 kb on - strand, within AO353_25480 at 5618.990 kb on - strand, within AO353_25480 at 5618.997 kb on + strand, within AO353_25480 at 5618.997 kb on + strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5619.032 kb on + strand, within AO353_25480 at 5619.033 kb on - strand, within AO353_25480 at 5619.033 kb on - strand, within AO353_25480 at 5619.135 kb on + strand at 5619.136 kb on - strand at 5619.170 kb on + strand at 5619.287 kb on + strand at 5619.287 kb on + strand at 5619.332 kb on - strand at 5619.336 kb on - strand at 5619.365 kb on + strand at 5619.398 kb on + strand at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.579 kb on + strand, within AO353_25485 at 5619.680 kb on - strand, within AO353_25485 at 5619.716 kb on + strand at 5619.717 kb on - strand, within AO353_25485 at 5619.731 kb on + strand, within AO353_25485 at 5619.731 kb on + strand, within AO353_25485 at 5619.807 kb on + strand, within AO353_25485 at 5619.807 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.981 kb on - strand at 5619.981 kb on - strand at 5619.981 kb on - strand at 5620.012 kb on + strand at 5620.012 kb on + strand at 5620.013 kb on - strand at 5620.013 kb on - strand at 5620.039 kb on - strand at 5620.049 kb on + strand at 5620.062 kb on - strand at 5620.102 kb on + strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.334 kb on + strand, within AO353_25490 at 5620.441 kb on + strand, within AO353_25490 at 5620.493 kb on + strand, within AO353_25490 at 5620.493 kb on + strand, within AO353_25490 at 5620.625 kb on - strand, within AO353_25490 at 5620.702 kb on + strand at 5620.702 kb on + strand, within AO353_25490 at 5620.702 kb on + strand, within AO353_25490 at 5620.709 kb on - strand, within AO353_25490 at 5620.709 kb on - strand, within AO353_25490 at 5620.813 kb on + strand at 5620.813 kb on + strand at 5620.814 kb on - strand at 5620.814 kb on - strand at 5620.870 kb on + strand at 5620.870 kb on + strand at 5620.870 kb on + strand at 5620.870 kb on + strand at 5620.870 kb on + strand at 5620.870 kb on + strand at 5620.871 kb on - strand at 5620.871 kb on - strand at 5620.871 kb on - strand at 5620.871 kb on - strand at 5620.871 kb on - strand at 5620.908 kb on + strand at 5620.909 kb on - strand at 5620.909 kb on - strand at 5620.916 kb on + strand at 5620.917 kb on - strand at 5620.922 kb on + strand at 5620.922 kb on + strand at 5620.923 kb on - strand at 5620.923 kb on - strand at 5620.971 kb on - strand, within AO353_25495 at 5620.980 kb on + strand, within AO353_25495 at 5620.981 kb on - strand, within AO353_25495
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 5,618,642 + AO353_25480 0.58 -0.7 5,618,642 + AO353_25480 0.58 +0.7 5,618,642 + AO353_25480 0.58 +1.3 5,618,643 - AO353_25480 0.58 -0.5 5,618,643 - AO353_25480 0.58 +1.0 5,618,643 - AO353_25480 0.58 +0.1 5,618,643 - AO353_25480 0.58 +1.5 5,618,643 - AO353_25480 0.58 -1.5 5,618,715 + AO353_25480 0.63 -0.3 5,618,715 + AO353_25480 0.63 +0.1 5,618,715 + AO353_25480 0.63 -0.6 5,618,715 + AO353_25480 0.63 -0.3 5,618,715 + AO353_25480 0.63 -0.9 5,618,715 + AO353_25480 0.63 +0.2 5,618,716 - AO353_25480 0.63 -0.2 5,618,716 - AO353_25480 0.63 -1.2 5,618,838 + AO353_25480 0.72 -0.2 5,618,838 + AO353_25480 0.72 +0.5 5,618,839 - AO353_25480 0.72 -1.1 5,618,881 - AO353_25480 0.75 +1.0 5,618,884 + AO353_25480 0.75 -0.3 5,618,885 - AO353_25480 0.75 -2.9 5,618,990 - AO353_25480 0.83 -1.9 5,618,997 + AO353_25480 0.83 +0.4 5,618,997 + AO353_25480 0.83 +1.5 5,618,998 - AO353_25480 0.83 -0.8 5,618,998 - AO353_25480 0.83 -0.4 5,618,998 - AO353_25480 0.83 +0.5 5,619,032 + AO353_25480 0.86 -1.3 5,619,033 - AO353_25480 0.86 +1.5 5,619,033 - AO353_25480 0.86 -1.0 5,619,135 + +0.7 5,619,136 - -0.9 5,619,170 + +0.5 5,619,287 + +0.1 5,619,287 + +1.9 5,619,332 - -0.3 5,619,336 - +0.8 5,619,365 + +0.4 5,619,398 + -1.3 5,619,438 + AO353_25485 0.15 -0.6 5,619,438 + AO353_25485 0.15 +0.4 5,619,438 + AO353_25485 0.15 -0.2 5,619,438 + AO353_25485 0.15 +0.3 5,619,438 + AO353_25485 0.15 +0.0 5,619,439 - AO353_25485 0.15 +0.3 5,619,439 - AO353_25485 0.15 -0.6 5,619,439 - AO353_25485 0.15 -0.4 5,619,439 - AO353_25485 0.15 +0.5 5,619,439 - AO353_25485 0.15 +0.2 5,619,579 + AO353_25485 0.36 -0.9 5,619,680 - AO353_25485 0.50 -0.2 5,619,716 + -1.3 5,619,717 - AO353_25485 0.56 -0.6 5,619,731 + AO353_25485 0.58 +0.3 5,619,731 + AO353_25485 0.58 -0.4 5,619,807 + AO353_25485 0.69 +1.5 5,619,807 + AO353_25485 0.69 -0.1 5,619,894 + AO353_25485 0.81 -0.4 5,619,894 + AO353_25485 0.81 -0.8 5,619,894 + AO353_25485 0.81 -0.9 5,619,894 + AO353_25485 0.81 +0.1 5,619,895 - AO353_25485 0.81 -1.4 5,619,895 - AO353_25485 0.81 -2.1 5,619,895 - AO353_25485 0.81 +0.5 5,619,980 + -0.9 5,619,980 + -2.2 5,619,980 + +0.2 5,619,980 + +0.4 5,619,981 - -0.4 5,619,981 - -0.7 5,619,981 - +0.1 5,620,012 + -1.8 5,620,012 + +0.2 5,620,013 - +0.5 5,620,013 - -0.5 5,620,039 - +0.7 5,620,049 + +0.2 5,620,062 - -2.3 5,620,102 + -0.1 5,620,103 - -0.6 5,620,103 - -0.5 5,620,103 - -1.8 5,620,103 - -1.2 5,620,103 - -0.9 5,620,103 - -0.3 5,620,103 - +0.1 5,620,103 - -1.1 5,620,103 - +1.9 5,620,334 + AO353_25490 0.27 -0.8 5,620,441 + AO353_25490 0.43 +0.7 5,620,493 + AO353_25490 0.50 -0.2 5,620,493 + AO353_25490 0.50 +0.5 5,620,625 - AO353_25490 0.69 +0.1 5,620,702 + +2.1 5,620,702 + AO353_25490 0.81 -0.5 5,620,702 + AO353_25490 0.81 +0.1 5,620,709 - AO353_25490 0.82 -1.3 5,620,709 - AO353_25490 0.82 -1.0 5,620,813 + +0.1 5,620,813 + +0.1 5,620,814 - -0.8 5,620,814 - -1.5 5,620,870 + -0.3 5,620,870 + +1.5 5,620,870 + -0.2 5,620,870 + +0.7 5,620,870 + +1.0 5,620,870 + +0.5 5,620,871 - -0.2 5,620,871 - -0.1 5,620,871 - -1.8 5,620,871 - -0.8 5,620,871 - -0.3 5,620,908 + -0.7 5,620,909 - +0.3 5,620,909 - +0.8 5,620,916 + -0.8 5,620,917 - -0.0 5,620,922 + -0.7 5,620,922 + -0.3 5,620,923 - -0.4 5,620,923 - +0.7 5,620,971 - AO353_25495 0.11 +0.9 5,620,980 + AO353_25495 0.12 -0.0 5,620,981 - AO353_25495 0.12 +0.3
Or see this region's nucleotide sequence