Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24785

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24780 and AO353_24785 are separated by 173 nucleotidesAO353_24785 and AO353_24790 overlap by 4 nucleotidesAO353_24790 and AO353_24795 are separated by 88 nucleotides AO353_24780: AO353_24780 - glutamine synthetase, at 5,462,157 to 5,463,515 _24780 AO353_24785: AO353_24785 - AraC family transcriptional regulator, at 5,463,689 to 5,464,621 _24785 AO353_24790: AO353_24790 - Cro/Cl family transcriptional regulator, at 5,464,618 to 5,465,214 _24790 AO353_24795: AO353_24795 - oxidoreductase, at 5,465,303 to 5,467,264 _24795 Position (kb) 5463 5464 5465Strain fitness (log2 ratio) -2 -1 0 1 2at 5462.792 kb on + strand, within AO353_24780at 5462.793 kb on - strand, within AO353_24780at 5463.085 kb on + strand, within AO353_24780at 5463.085 kb on + strand, within AO353_24780at 5463.085 kb on + strand, within AO353_24780at 5463.085 kb on + strand, within AO353_24780at 5463.086 kb on - strand, within AO353_24780at 5463.134 kb on - strandat 5463.134 kb on - strand, within AO353_24780at 5463.250 kb on + strand, within AO353_24780at 5463.250 kb on + strand, within AO353_24780at 5463.250 kb on + strand, within AO353_24780at 5463.250 kb on + strand, within AO353_24780at 5463.251 kb on - strand, within AO353_24780at 5463.310 kb on + strand, within AO353_24780at 5463.310 kb on + strand, within AO353_24780at 5463.311 kb on - strand, within AO353_24780at 5463.313 kb on + strand, within AO353_24780at 5463.313 kb on + strand, within AO353_24780at 5463.313 kb on + strand, within AO353_24780at 5463.314 kb on - strand, within AO353_24780at 5463.314 kb on - strand, within AO353_24780at 5463.314 kb on - strand, within AO353_24780at 5463.412 kb on - strandat 5463.515 kb on + strandat 5463.515 kb on + strandat 5463.515 kb on + strandat 5463.516 kb on - strandat 5463.536 kb on + strandat 5463.536 kb on + strandat 5463.536 kb on + strandat 5463.567 kb on + strandat 5463.567 kb on + strandat 5463.567 kb on + strandat 5463.568 kb on - strandat 5463.568 kb on - strandat 5463.607 kb on + strandat 5463.635 kb on + strandat 5463.635 kb on + strandat 5463.635 kb on + strandat 5463.636 kb on - strandat 5463.636 kb on - strandat 5463.644 kb on + strandat 5463.644 kb on + strandat 5463.779 kb on + strandat 5463.941 kb on + strand, within AO353_24785at 5463.941 kb on + strand, within AO353_24785at 5463.941 kb on + strand, within AO353_24785at 5463.941 kb on + strand, within AO353_24785at 5463.941 kb on + strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.942 kb on - strand, within AO353_24785at 5463.989 kb on + strand, within AO353_24785at 5463.989 kb on + strand, within AO353_24785at 5463.989 kb on + strand, within AO353_24785at 5463.989 kb on + strand, within AO353_24785at 5463.990 kb on - strand, within AO353_24785at 5464.048 kb on - strand, within AO353_24785at 5464.048 kb on - strand, within AO353_24785at 5464.048 kb on - strand, within AO353_24785at 5464.205 kb on - strand, within AO353_24785at 5464.388 kb on + strand, within AO353_24785at 5464.388 kb on + strand, within AO353_24785at 5464.388 kb on + strand, within AO353_24785at 5464.388 kb on + strand, within AO353_24785at 5464.389 kb on - strand, within AO353_24785at 5464.389 kb on - strand, within AO353_24785at 5464.389 kb on - strand, within AO353_24785at 5464.561 kb on - strandat 5464.646 kb on - strandat 5464.805 kb on + strand, within AO353_24790at 5464.805 kb on + strand, within AO353_24790at 5464.805 kb on + strand, within AO353_24790at 5464.806 kb on - strand, within AO353_24790at 5464.820 kb on + strand, within AO353_24790at 5464.820 kb on + strand, within AO353_24790at 5464.820 kb on + strand, within AO353_24790at 5464.820 kb on + strand, within AO353_24790at 5464.821 kb on - strand, within AO353_24790at 5464.821 kb on - strand, within AO353_24790at 5464.821 kb on - strand, within AO353_24790at 5464.821 kb on - strand, within AO353_24790at 5464.821 kb on - strand, within AO353_24790at 5464.908 kb on - strand, within AO353_24790at 5465.046 kb on - strand, within AO353_24790at 5465.075 kb on + strand, within AO353_24790at 5465.075 kb on + strand, within AO353_24790at 5465.075 kb on + strand, within AO353_24790at 5465.075 kb on + strand, within AO353_24790at 5465.076 kb on - strand, within AO353_24790at 5465.076 kb on - strand, within AO353_24790at 5465.277 kb on + strandat 5465.277 kb on + strandat 5465.278 kb on - strandat 5465.279 kb on + strandat 5465.280 kb on - strandat 5465.292 kb on + strandat 5465.293 kb on - strandat 5465.295 kb on - strandat 5465.295 kb on - strandat 5465.295 kb on - strandat 5465.334 kb on + strandat 5465.335 kb on - strandat 5465.505 kb on + strand, within AO353_24795at 5465.505 kb on + strand, within AO353_24795at 5465.530 kb on - strand, within AO353_24795at 5465.541 kb on + strand, within AO353_24795at 5465.542 kb on - strand, within AO353_24795at 5465.566 kb on + strand, within AO353_24795at 5465.566 kb on + strand, within AO353_24795at 5465.566 kb on + strand, within AO353_24795at 5465.566 kb on + strand, within AO353_24795at 5465.566 kb on + strand, within AO353_24795at 5465.567 kb on - strand, within AO353_24795at 5465.567 kb on - strand, within AO353_24795at 5465.567 kb on - strand, within AO353_24795at 5465.599 kb on - strand, within AO353_24795at 5465.599 kb on - strand, within AO353_24795at 5465.599 kb on - strand, within AO353_24795at 5465.599 kb on - strand, within AO353_24795

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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5,462,792 + AO353_24780 0.47 +0.0
5,462,793 - AO353_24780 0.47 +0.2
5,463,085 + AO353_24780 0.68 -2.1
5,463,085 + AO353_24780 0.68 +2.2
5,463,085 + AO353_24780 0.68 +0.4
5,463,085 + AO353_24780 0.68 -0.7
5,463,086 - AO353_24780 0.68 +0.1
5,463,134 - +2.1
5,463,134 - AO353_24780 0.72 +0.8
5,463,250 + AO353_24780 0.80 -1.2
5,463,250 + AO353_24780 0.80 +0.8
5,463,250 + AO353_24780 0.80 +1.0
5,463,250 + AO353_24780 0.80 -1.5
5,463,251 - AO353_24780 0.81 -1.9
5,463,310 + AO353_24780 0.85 +0.4
5,463,310 + AO353_24780 0.85 +0.9
5,463,311 - AO353_24780 0.85 -1.2
5,463,313 + AO353_24780 0.85 -0.5
5,463,313 + AO353_24780 0.85 +0.4
5,463,313 + AO353_24780 0.85 +0.3
5,463,314 - AO353_24780 0.85 -0.9
5,463,314 - AO353_24780 0.85 +0.0
5,463,314 - AO353_24780 0.85 -1.4
5,463,412 - +0.2
5,463,515 + +0.8
5,463,515 + -0.3
5,463,515 + +0.4
5,463,516 - +0.6
5,463,536 + -0.9
5,463,536 + -0.5
5,463,536 + +0.1
5,463,567 + -0.1
5,463,567 + -0.6
5,463,567 + -1.1
5,463,568 - -1.1
5,463,568 - +2.5
5,463,607 + +0.2
5,463,635 + +0.2
5,463,635 + +0.2
5,463,635 + -2.2
5,463,636 - -0.4
5,463,636 - +0.1
5,463,644 + +0.2
5,463,644 + +0.5
5,463,779 + +0.3
5,463,941 + AO353_24785 0.27 -0.2
5,463,941 + AO353_24785 0.27 -1.5
5,463,941 + AO353_24785 0.27 -0.7
5,463,941 + AO353_24785 0.27 -0.4
5,463,941 + AO353_24785 0.27 -1.2
5,463,942 - AO353_24785 0.27 -0.3
5,463,942 - AO353_24785 0.27 -0.4
5,463,942 - AO353_24785 0.27 +0.4
5,463,942 - AO353_24785 0.27 +0.6
5,463,942 - AO353_24785 0.27 -0.3
5,463,942 - AO353_24785 0.27 +0.3
5,463,989 + AO353_24785 0.32 -0.9
5,463,989 + AO353_24785 0.32 +1.3
5,463,989 + AO353_24785 0.32 +1.3
5,463,989 + AO353_24785 0.32 -0.7
5,463,990 - AO353_24785 0.32 +1.0
5,464,048 - AO353_24785 0.38 -1.0
5,464,048 - AO353_24785 0.38 +0.7
5,464,048 - AO353_24785 0.38 -1.4
5,464,205 - AO353_24785 0.55 +0.8
5,464,388 + AO353_24785 0.75 -1.4
5,464,388 + AO353_24785 0.75 +0.1
5,464,388 + AO353_24785 0.75 -0.4
5,464,388 + AO353_24785 0.75 -1.0
5,464,389 - AO353_24785 0.75 -0.4
5,464,389 - AO353_24785 0.75 -1.0
5,464,389 - AO353_24785 0.75 +0.4
5,464,561 - -0.2
5,464,646 - +0.4
5,464,805 + AO353_24790 0.31 +0.4
5,464,805 + AO353_24790 0.31 +1.2
5,464,805 + AO353_24790 0.31 -0.8
5,464,806 - AO353_24790 0.31 -0.2
5,464,820 + AO353_24790 0.34 +0.6
5,464,820 + AO353_24790 0.34 -0.1
5,464,820 + AO353_24790 0.34 -1.3
5,464,820 + AO353_24790 0.34 +1.8
5,464,821 - AO353_24790 0.34 +0.5
5,464,821 - AO353_24790 0.34 +0.5
5,464,821 - AO353_24790 0.34 -0.4
5,464,821 - AO353_24790 0.34 +0.8
5,464,821 - AO353_24790 0.34 -0.1
5,464,908 - AO353_24790 0.49 -0.2
5,465,046 - AO353_24790 0.72 +0.1
5,465,075 + AO353_24790 0.77 +0.5
5,465,075 + AO353_24790 0.77 +0.2
5,465,075 + AO353_24790 0.77 +0.2
5,465,075 + AO353_24790 0.77 -1.8
5,465,076 - AO353_24790 0.77 -0.4
5,465,076 - AO353_24790 0.77 +0.3
5,465,277 + -2.5
5,465,277 + +0.1
5,465,278 - +0.1
5,465,279 + -1.2
5,465,280 - +0.8
5,465,292 + -0.2
5,465,293 - +0.0
5,465,295 - -0.8
5,465,295 - -1.2
5,465,295 - +0.8
5,465,334 + -0.3
5,465,335 - -0.1
5,465,505 + AO353_24795 0.10 -1.0
5,465,505 + AO353_24795 0.10 +0.3
5,465,530 - AO353_24795 0.12 -0.2
5,465,541 + AO353_24795 0.12 +0.3
5,465,542 - AO353_24795 0.12 -0.6
5,465,566 + AO353_24795 0.13 -0.6
5,465,566 + AO353_24795 0.13 +0.5
5,465,566 + AO353_24795 0.13 +0.3
5,465,566 + AO353_24795 0.13 -1.3
5,465,566 + AO353_24795 0.13 -0.5
5,465,567 - AO353_24795 0.13 -0.7
5,465,567 - AO353_24795 0.13 -1.7
5,465,567 - AO353_24795 0.13 -1.7
5,465,599 - AO353_24795 0.15 -1.7
5,465,599 - AO353_24795 0.15 +0.9
5,465,599 - AO353_24795 0.15 +0.2
5,465,599 - AO353_24795 0.15 +1.2

Or see this region's nucleotide sequence