Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19295 and AO353_19300 are separated by 80 nucleotides AO353_19300 and AO353_19305 are separated by 70 nucleotides AO353_19305 and AO353_19310 are separated by 59 nucleotides AO353_19310 and AO353_19315 overlap by 4 nucleotides
AO353_19295: AO353_19295 - hypothetical protein, at 4,229,103 to 4,229,387
_19295
AO353_19300: AO353_19300 - exonuclease, at 4,229,468 to 4,230,010
_19300
AO353_19305: AO353_19305 - 3-methylcrotonyl-CoA carboxylase, at 4,230,081 to 4,232,042
_19305
AO353_19310: AO353_19310 - enoyl-CoA hydratase, at 4,232,102 to 4,232,899
_19310
AO353_19315: AO353_19315 - acyl-CoA dehydrogenase, at 4,232,896 to 4,234,053
_19315
Position (kb) 4230
4231
4232
4233 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4229.113 kb on + strand at 4229.125 kb on + strand at 4229.125 kb on + strand at 4229.126 kb on - strand at 4229.126 kb on - strand at 4229.126 kb on - strand at 4229.173 kb on - strand, within AO353_19295 at 4229.288 kb on - strand, within AO353_19295 at 4229.288 kb on - strand, within AO353_19295 at 4229.368 kb on + strand at 4229.368 kb on + strand at 4229.369 kb on - strand at 4229.369 kb on - strand at 4229.369 kb on - strand at 4229.381 kb on + strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.426 kb on - strand at 4229.503 kb on + strand at 4229.503 kb on + strand at 4229.504 kb on - strand at 4229.504 kb on - strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.543 kb on - strand, within AO353_19300 at 4229.737 kb on + strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.804 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.887 kb on - strand, within AO353_19300 at 4229.993 kb on + strand at 4230.051 kb on + strand at 4230.051 kb on + strand at 4230.083 kb on - strand at 4230.083 kb on - strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.631 kb on + strand at 4230.631 kb on + strand at 4230.631 kb on + strand, within AO353_19305 at 4230.631 kb on + strand, within AO353_19305 at 4230.632 kb on - strand, within AO353_19305 at 4230.828 kb on + strand, within AO353_19305 at 4230.828 kb on + strand, within AO353_19305 at 4230.828 kb on + strand, within AO353_19305 at 4230.828 kb on + strand, within AO353_19305 at 4230.829 kb on - strand, within AO353_19305 at 4230.862 kb on + strand, within AO353_19305 at 4230.893 kb on - strand, within AO353_19305 at 4230.971 kb on + strand, within AO353_19305 at 4230.971 kb on + strand, within AO353_19305 at 4230.971 kb on + strand, within AO353_19305 at 4230.972 kb on - strand, within AO353_19305 at 4230.972 kb on - strand, within AO353_19305 at 4231.183 kb on + strand, within AO353_19305 at 4231.184 kb on - strand, within AO353_19305 at 4231.184 kb on - strand, within AO353_19305 at 4231.235 kb on - strand, within AO353_19305 at 4231.235 kb on - strand, within AO353_19305 at 4231.235 kb on - strand, within AO353_19305 at 4231.369 kb on + strand, within AO353_19305 at 4231.369 kb on + strand, within AO353_19305 at 4231.369 kb on + strand, within AO353_19305 at 4231.369 kb on + strand, within AO353_19305 at 4231.369 kb on + strand at 4231.370 kb on - strand, within AO353_19305 at 4231.370 kb on - strand, within AO353_19305 at 4231.610 kb on + strand, within AO353_19305 at 4231.730 kb on + strand, within AO353_19305 at 4231.858 kb on + strand at 4231.858 kb on + strand at 4231.859 kb on - strand at 4231.998 kb on + strand at 4231.998 kb on + strand at 4231.998 kb on + strand at 4231.999 kb on - strand at 4231.999 kb on - strand at 4232.068 kb on + strand at 4232.069 kb on - strand at 4232.069 kb on - strand at 4232.069 kb on - strand at 4232.103 kb on + strand at 4232.132 kb on + strand at 4232.132 kb on + strand at 4232.133 kb on - strand at 4232.133 kb on - strand at 4232.420 kb on + strand, within AO353_19310 at 4232.420 kb on + strand, within AO353_19310 at 4232.421 kb on - strand, within AO353_19310 at 4232.771 kb on + strand, within AO353_19310 at 4232.986 kb on + strand at 4232.986 kb on + strand at 4232.986 kb on + strand at 4232.986 kb on + strand at 4232.986 kb on + strand at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.024 kb on + strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.025 kb on - strand, within AO353_19315 at 4233.026 kb on + strand, within AO353_19315 at 4233.026 kb on + strand, within AO353_19315 at 4233.026 kb on + strand, within AO353_19315 at 4233.026 kb on + strand, within AO353_19315 at 4233.026 kb on + strand, within AO353_19315 at 4233.027 kb on - strand, within AO353_19315 at 4233.027 kb on - strand, within AO353_19315 at 4233.027 kb on - strand, within AO353_19315
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 4,229,113 + -0.2 4,229,125 + +0.4 4,229,125 + -1.1 4,229,126 - -0.0 4,229,126 - -0.0 4,229,126 - +1.0 4,229,173 - AO353_19295 0.25 +1.2 4,229,288 - AO353_19295 0.65 -0.2 4,229,288 - AO353_19295 0.65 +0.3 4,229,368 + -0.5 4,229,368 + -0.1 4,229,369 - +0.8 4,229,369 - -0.0 4,229,369 - -1.4 4,229,381 + -0.3 4,229,382 - -0.9 4,229,382 - +0.2 4,229,382 - -0.8 4,229,382 - -0.9 4,229,382 - +1.0 4,229,426 - -0.2 4,229,503 + -1.7 4,229,503 + -1.4 4,229,504 - +1.0 4,229,504 - +3.8 4,229,506 + -0.8 4,229,506 + +0.4 4,229,506 + -0.5 4,229,506 + +0.5 4,229,506 + -1.9 4,229,506 + -0.3 4,229,506 + +0.8 4,229,507 - +1.1 4,229,507 - -1.8 4,229,507 - -0.5 4,229,507 - +0.7 4,229,507 - +1.4 4,229,507 - -1.4 4,229,543 - AO353_19300 0.14 -1.0 4,229,737 + AO353_19300 0.50 -2.0 4,229,738 - AO353_19300 0.50 -0.3 4,229,738 - AO353_19300 0.50 -0.2 4,229,738 - AO353_19300 0.50 -0.0 4,229,804 - AO353_19300 0.62 +0.2 4,229,817 - AO353_19300 0.64 +1.2 4,229,817 - AO353_19300 0.64 -0.1 4,229,817 - AO353_19300 0.64 -0.0 4,229,817 - AO353_19300 0.64 -0.1 4,229,886 + AO353_19300 0.77 -0.9 4,229,886 + AO353_19300 0.77 +0.1 4,229,886 + AO353_19300 0.77 +0.2 4,229,887 - AO353_19300 0.77 -1.6 4,229,993 + -1.1 4,230,051 + -0.5 4,230,051 + -0.3 4,230,083 - +0.6 4,230,083 - -0.6 4,230,249 + +0.3 4,230,249 + -1.2 4,230,249 + +1.4 4,230,249 + +0.0 4,230,249 + -0.3 4,230,250 - +0.2 4,230,250 - -0.4 4,230,250 - +0.4 4,230,250 - +0.8 4,230,250 - +1.0 4,230,631 + +2.0 4,230,631 + +1.0 4,230,631 + AO353_19305 0.28 +0.5 4,230,631 + AO353_19305 0.28 -0.8 4,230,632 - AO353_19305 0.28 -0.2 4,230,828 + AO353_19305 0.38 +0.2 4,230,828 + AO353_19305 0.38 -0.6 4,230,828 + AO353_19305 0.38 -0.1 4,230,828 + AO353_19305 0.38 -0.4 4,230,829 - AO353_19305 0.38 +0.3 4,230,862 + AO353_19305 0.40 +0.8 4,230,893 - AO353_19305 0.41 -0.8 4,230,971 + AO353_19305 0.45 -2.1 4,230,971 + AO353_19305 0.45 -0.6 4,230,971 + AO353_19305 0.45 -0.1 4,230,972 - AO353_19305 0.45 +2.0 4,230,972 - AO353_19305 0.45 +1.0 4,231,183 + AO353_19305 0.56 -0.1 4,231,184 - AO353_19305 0.56 -0.5 4,231,184 - AO353_19305 0.56 -2.0 4,231,235 - AO353_19305 0.59 +1.0 4,231,235 - AO353_19305 0.59 +0.5 4,231,235 - AO353_19305 0.59 -1.3 4,231,369 + AO353_19305 0.66 -1.9 4,231,369 + AO353_19305 0.66 -0.6 4,231,369 + AO353_19305 0.66 -0.8 4,231,369 + AO353_19305 0.66 -1.0 4,231,369 + -0.8 4,231,370 - AO353_19305 0.66 +0.7 4,231,370 - AO353_19305 0.66 -0.4 4,231,610 + AO353_19305 0.78 -1.4 4,231,730 + AO353_19305 0.84 -0.7 4,231,858 + -1.1 4,231,858 + +1.2 4,231,859 - -2.3 4,231,998 + -0.3 4,231,998 + +0.3 4,231,998 + -1.2 4,231,999 - +0.2 4,231,999 - -1.1 4,232,068 + +0.4 4,232,069 - -0.6 4,232,069 - -1.0 4,232,069 - +0.0 4,232,103 + +2.7 4,232,132 + -0.0 4,232,132 + +0.8 4,232,133 - +1.4 4,232,133 - -0.8 4,232,420 + AO353_19310 0.40 +0.7 4,232,420 + AO353_19310 0.40 -1.1 4,232,421 - AO353_19310 0.40 +0.7 4,232,771 + AO353_19310 0.84 -0.6 4,232,986 + -0.9 4,232,986 + -2.3 4,232,986 + -1.7 4,232,986 + -0.2 4,232,986 + +0.2 4,233,024 + AO353_19315 0.11 -1.3 4,233,024 + AO353_19315 0.11 +0.2 4,233,024 + AO353_19315 0.11 +0.2 4,233,024 + AO353_19315 0.11 -1.9 4,233,024 + AO353_19315 0.11 +0.6 4,233,024 + AO353_19315 0.11 -2.0 4,233,024 + AO353_19315 0.11 -0.4 4,233,024 + AO353_19315 0.11 +0.5 4,233,024 + AO353_19315 0.11 +0.8 4,233,024 + AO353_19315 0.11 +0.2 4,233,024 + AO353_19315 0.11 +0.6 4,233,024 + AO353_19315 0.11 -1.3 4,233,024 + AO353_19315 0.11 +0.1 4,233,024 + AO353_19315 0.11 -0.1 4,233,024 + AO353_19315 0.11 -0.1 4,233,024 + AO353_19315 0.11 +0.4 4,233,024 + AO353_19315 0.11 -0.6 4,233,024 + AO353_19315 0.11 -0.6 4,233,024 + AO353_19315 0.11 -2.2 4,233,024 + AO353_19315 0.11 -0.0 4,233,024 + AO353_19315 0.11 +0.5 4,233,024 + AO353_19315 0.11 -1.0 4,233,024 + AO353_19315 0.11 -0.2 4,233,025 - AO353_19315 0.11 -1.9 4,233,025 - AO353_19315 0.11 +1.0 4,233,025 - AO353_19315 0.11 +0.5 4,233,025 - AO353_19315 0.11 -0.5 4,233,025 - AO353_19315 0.11 -0.1 4,233,025 - AO353_19315 0.11 +0.5 4,233,025 - AO353_19315 0.11 -1.3 4,233,025 - AO353_19315 0.11 +0.4 4,233,025 - AO353_19315 0.11 -1.8 4,233,025 - AO353_19315 0.11 +0.5 4,233,025 - AO353_19315 0.11 -1.2 4,233,025 - AO353_19315 0.11 +1.6 4,233,025 - AO353_19315 0.11 +0.4 4,233,025 - AO353_19315 0.11 +0.2 4,233,026 + AO353_19315 0.11 -0.3 4,233,026 + AO353_19315 0.11 +1.5 4,233,026 + AO353_19315 0.11 -0.1 4,233,026 + AO353_19315 0.11 -0.5 4,233,026 + AO353_19315 0.11 +0.2 4,233,027 - AO353_19315 0.11 +0.4 4,233,027 - AO353_19315 0.11 -0.1 4,233,027 - AO353_19315 0.11 -0.9
Or see this region's nucleotide sequence