Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15190

Experiment: Carnitine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (C)
3,356,622	+		AO353_15185	0.17	+0.6
3,356,623	-		AO353_15185	0.17	+0.3
3,356,655	+		AO353_15185	0.20	+0.6
3,356,656	-		AO353_15185	0.20	-1.9
3,356,656	-		AO353_15185	0.20	-0.8
3,356,656	-		AO353_15185	0.20	-1.3
3,356,656	-		AO353_15185	0.20	-2.4
3,356,943	+		AO353_15185	0.46	-0.1
3,356,943	+		AO353_15185	0.46	-0.2
3,356,943	+		AO353_15185	0.46	+2.0
3,357,201	-		AO353_15185	0.70	-0.2
3,357,201	-		AO353_15185	0.70	-2.2
3,357,267	+		AO353_15185	0.76	-2.5
3,357,267	+		AO353_15185	0.76	-0.8
3,357,356	+		AO353_15185	0.84	-2.4
3,357,356	+		AO353_15185	0.84	-0.2
3,357,357	-		AO353_15185	0.84	-0.4
3,357,357	-		AO353_15185	0.84	-0.6
3,357,379	-		AO353_15185	0.86	+1.0
3,357,403	+		AO353_15185	0.88	+0.6
3,357,404	-		AO353_15185	0.88	-0.8
3,357,404	-		AO353_15185	0.88	-0.3
3,357,404	-		AO353_15185	0.88	-1.1
3,357,433	-				-0.5
3,357,544	+				-0.4
3,357,544	+				+0.5
3,357,545	-				-0.2
3,357,575	+				-1.3
3,357,575	+				-0.0
3,357,576	-				-0.7
3,357,576	-				-0.1
3,357,576	-				-0.6
3,357,629	+				+0.0
3,357,629	+				-0.1
3,357,629	+				+0.2
3,357,629	+				-0.2
3,357,629	+				-0.3
3,357,629	+				+0.2
3,357,629	+				-0.5
3,357,630	-				+0.9
3,357,630	-				+1.4
3,357,630	-				-0.9
3,357,710	-		AO353_15190	0.13	+0.1
3,357,710	-		AO353_15190	0.13	-2.1
3,357,745	-		AO353_15190	0.16	-0.1
3,357,883	-		AO353_15190	0.30	+3.5
3,357,977	+		AO353_15190	0.40	-2.7
3,357,978	-		AO353_15190	0.40	+0.8
3,358,004	+		AO353_15190	0.42	+0.0
3,358,004	+		AO353_15190	0.42	+0.8
3,358,004	+		AO353_15190	0.42	+0.4
3,358,004	+		AO353_15190	0.42	-0.7
3,358,004	+		AO353_15190	0.42	+0.0
3,358,005	-		AO353_15190	0.43	+1.1
3,358,005	-		AO353_15190	0.43	-0.2
3,358,005	-		AO353_15190	0.43	-0.5
3,358,008	+		AO353_15190	0.43	-1.7
3,358,127	+		AO353_15190	0.55	-1.0
3,358,134	-		AO353_15190	0.56	+0.0
3,358,134	-		AO353_15190	0.56	+0.6
3,358,134	-		AO353_15190	0.56	+0.2
3,358,268	+		AO353_15190	0.69	-1.6
3,358,268	+		AO353_15190	0.69	+0.5
3,358,268	+		AO353_15190	0.69	-0.2
3,358,268	+		AO353_15190	0.69	-1.4
3,358,268	+		AO353_15190	0.69	+0.2
3,358,268	+		AO353_15190	0.69	-0.5
3,358,269	-		AO353_15190	0.69	+0.6
3,358,269	-		AO353_15190	0.69	+0.1
3,358,269	-		AO353_15190	0.69	-1.1
3,358,269	-		AO353_15190	0.69	-1.2
3,358,269	-		AO353_15190	0.69	+1.3
3,358,269	-		AO353_15190	0.69	-1.9
3,358,269	-		AO353_15190	0.69	-0.3
3,358,269	-		AO353_15190	0.69	-0.9
3,358,272	+		AO353_15190	0.69	-0.3
3,358,273	-		AO353_15190	0.69	+0.6
3,358,273	-		AO353_15190	0.69	+1.0
3,358,273	-		AO353_15190	0.69	+0.4
3,358,353	+		AO353_15190	0.78	-0.2
3,358,412	+		AO353_15190	0.83	+0.4
3,358,412	+		AO353_15190	0.83	-1.2
3,358,413	-		AO353_15190	0.84	+0.4
3,358,413	-		AO353_15190	0.84	+0.5
3,358,555	+				+0.5
3,358,556	-				+0.6
3,358,581	+				+0.4
3,358,581	+				-0.5
3,358,581	+				-1.0
3,358,581	+				+0.5
3,358,582	-				-0.6
3,358,582	-				-0.1
3,358,582	-				+2.8
3,358,582	-				+0.2
3,358,582	-				-0.2
3,358,582	-				-0.2
3,358,582	-				-0.6
3,358,582	-				-0.1
3,358,604	+				+1.4
3,358,604	+				-0.5
3,358,604	+				+1.1
3,358,687	+				+1.3
3,358,688	-				+0.5
3,358,750	+				+0.7
3,358,750	+				-1.5
3,358,750	+				-1.6
3,358,750	+				+0.6
3,358,751	-				-0.9
3,358,751	-				+2.4
3,358,754	+				+2.1
3,358,754	+				-0.0
3,358,754	+				+0.3
3,358,754	+				+0.1
3,358,754	+				-1.2
3,358,754	+				+0.2
3,358,754	+				-0.2
3,358,754	+				-0.2
3,358,754	+				+0.4
3,358,754	+				-0.0
3,358,754	+				-1.0
3,358,754	+				-0.3
3,358,754	+				-0.1
3,358,754	+				-0.9
3,358,754	+				+0.5
3,358,754	+				-0.0
3,358,754	+				+0.1
3,358,754	+				+1.2
3,358,754	+				+0.3
3,358,754	+				-1.4
3,358,755	-				-0.5
3,358,755	-				+1.0
3,358,755	-				-0.2
3,358,755	-				-0.1
3,358,755	-				-1.2
3,358,755	-				+1.0
3,358,755	-				+1.2
3,358,755	-				-0.3
3,358,755	-				+0.6
3,358,755	-				+1.4
3,358,755	-				-0.5
3,358,755	-				+0.1
3,358,755	-				-1.2
3,358,764	+				-0.8
3,358,764	+				+1.8
3,358,764	+				-2.5
3,358,765	-				-1.3
3,358,765	-				+0.4
3,358,822	+		AO353_15195	0.12	+0.9
3,358,840	+		AO353_15195	0.13	-1.5
3,358,840	+		AO353_15195	0.13	+0.1
3,358,841	-				+3.4
3,358,841	-		AO353_15195	0.13	+0.8
3,358,841	-		AO353_15195	0.13	-0.9
3,358,841	-		AO353_15195	0.13	-0.2
3,358,841	-		AO353_15195	0.13	+0.6
3,358,841	-		AO353_15195	0.13	-0.2
3,358,841	-		AO353_15195	0.13	-0.1
3,358,843	+		AO353_15195	0.14	-0.2
3,358,843	+		AO353_15195	0.14	-0.4
3,358,843	+		AO353_15195	0.14	+0.4
3,358,843	+		AO353_15195	0.14	+1.7
3,358,843	+		AO353_15195	0.14	+0.0
3,358,843	+		AO353_15195	0.14	+1.4
3,358,843	+		AO353_15195	0.14	+1.8
3,358,844	-		AO353_15195	0.14	+0.9
3,358,844	-		AO353_15195	0.14	+0.2
3,358,844	-		AO353_15195	0.14	-0.9
3,358,844	-		AO353_15195	0.14	-0.1
3,358,844	-		AO353_15195	0.14	-1.9
3,358,844	-		AO353_15195	0.14	-1.5
3,358,844	-		AO353_15195	0.14	+0.4
3,358,862	+		AO353_15195	0.15	+0.0
3,358,862	+		AO353_15195	0.15	+0.0
3,358,862	+		AO353_15195	0.15	-0.5
3,358,904	+		AO353_15195	0.19	-1.6
3,358,904	+		AO353_15195	0.19	-0.4
3,358,904	+		AO353_15195	0.19	+2.0
3,358,904	+				-0.2
3,358,904	+		AO353_15195	0.19	+1.9
3,358,904	+		AO353_15195	0.19	+0.0
3,358,904	+		AO353_15195	0.19	-0.4
3,358,904	+		AO353_15195	0.19	-0.5
3,358,904	+		AO353_15195	0.19	-0.2
3,358,904	+		AO353_15195	0.19	+0.5
3,358,904	+		AO353_15195	0.19	+0.2
3,358,905	-		AO353_15195	0.19	-1.8
3,358,905	-		AO353_15195	0.19	-0.6
3,358,905	-		AO353_15195	0.19	-0.9
3,358,905	-		AO353_15195	0.19	-1.1
3,358,905	-		AO353_15195	0.19	-0.5
3,358,905	-		AO353_15195	0.19	+0.5
3,358,905	-		AO353_15195	0.19	-0.0
3,358,905	-		AO353_15195	0.19	+1.1
3,358,905	-		AO353_15195	0.19	-0.4
3,358,957	+		AO353_15195	0.23	+0.8
3,358,957	+		AO353_15195	0.23	+0.2
3,359,013	-		AO353_15195	0.27	-1.8
3,359,013	-		AO353_15195	0.27	-1.0
3,359,013	-		AO353_15195	0.27	-0.8
3,359,015	-		AO353_15195	0.28	+0.4
3,359,039	+		AO353_15195	0.30	+0.0
3,359,039	+		AO353_15195	0.30	-1.3
3,359,039	+		AO353_15195	0.30	-1.0
3,359,039	+		AO353_15195	0.30	-1.1
3,359,040	-		AO353_15195	0.30	-1.9
3,359,040	-		AO353_15195	0.30	+2.2
3,359,040	-		AO353_15195	0.30	+0.5
3,359,040	-		AO353_15195	0.30	-2.0
3,359,040	-		AO353_15195	0.30	-2.1
3,359,040	-		AO353_15195	0.30	-2.6
3,359,059	+		AO353_15195	0.31	+0.8
3,359,240	+		AO353_15195	0.46	-1.6
3,359,241	-		AO353_15195	0.46	+0.1
3,359,251	+		AO353_15195	0.47	-0.1
3,359,251	+		AO353_15195	0.47	-2.0
3,359,251	+		AO353_15195	0.47	-1.0
3,359,251	+		AO353_15195	0.47	+0.4
3,359,252	-		AO353_15195	0.47	+1.5
3,359,252	-		AO353_15195	0.47	-0.2
3,359,252	-		AO353_15195	0.47	+0.5
3,359,252	-		AO353_15195	0.47	-0.5
3,359,252	-		AO353_15195	0.47	-0.9
3,359,252	-		AO353_15195	0.47	+1.5
3,359,252	-		AO353_15195	0.47	-0.5
3,359,330	+		AO353_15195	0.53	+0.1
3,359,330	+		AO353_15195	0.53	+0.8
3,359,330	+		AO353_15195	0.53	-1.5
3,359,330	+		AO353_15195	0.53	-0.1
3,359,330	+		AO353_15195	0.53	+0.0
3,359,330	+		AO353_15195	0.53	+0.3
3,359,330	+		AO353_15195	0.53	+0.5
3,359,330	+		AO353_15195	0.53	+2.1
3,359,330	+		AO353_15195	0.53	-1.8
3,359,330	+		AO353_15195	0.53	+0.0
3,359,330	+		AO353_15195	0.53	+1.1
3,359,330	+		AO353_15195	0.53	+0.6
3,359,330	+		AO353_15195	0.53	-0.3
3,359,330	+		AO353_15195	0.53	+0.0
3,359,331	-		AO353_15195	0.53	+0.6
3,359,331	-		AO353_15195	0.53	+0.4
3,359,331	-		AO353_15195	0.53	-0.5
3,359,331	-		AO353_15195	0.53	+2.0
3,359,331	-		AO353_15195	0.53	+0.9
3,359,331	-		AO353_15195	0.53	-0.1
3,359,331	-		AO353_15195	0.53	+0.6
3,359,331	-		AO353_15195	0.53	+0.7
3,359,331	-		AO353_15195	0.53	+0.2
3,359,334	+		AO353_15195	0.54	+0.0
3,359,341	+		AO353_15195	0.54	-0.4
3,359,341	+		AO353_15195	0.54	-0.4
3,359,342	-		AO353_15195	0.54	-1.1
3,359,344	+		AO353_15195	0.55	-1.4
3,359,344	+		AO353_15195	0.55	-1.0
3,359,344	+		AO353_15195	0.55	+0.2
3,359,344	+		AO353_15195	0.55	-0.2
3,359,345	-		AO353_15195	0.55	+1.9
3,359,345	-		AO353_15195	0.55	+0.2
3,359,345	-		AO353_15195	0.55	+0.5
3,359,345	-		AO353_15195	0.55	-1.3
3,359,345	-		AO353_15195	0.55	-0.7
3,359,505	+		AO353_15195	0.68	-0.4
3,359,506	-		AO353_15195	0.68	+0.2
3,359,552	-		AO353_15195	0.72	-0.2
3,359,564	+		AO353_15195	0.73	+1.0
3,359,564	+		AO353_15195	0.73	+1.5
3,359,565	-		AO353_15195	0.73	+1.0