Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14780 and AO353_14785 overlap by 4 nucleotides AO353_14785 and AO353_14790 are separated by 0 nucleotides AO353_14790 and AO353_14795 overlap by 7 nucleotides
AO353_14780: AO353_14780 - glutamyl-tRNA reductase, at 3,273,523 to 3,274,812
_14780
AO353_14785: AO353_14785 - peptide chain release factor 1, at 3,274,809 to 3,275,891
_14785
AO353_14790: AO353_14790 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 3,275,892 to 3,276,722
_14790
AO353_14795: AO353_14795 - molybdopterin-synthase adenylyltransferase, at 3,276,716 to 3,277,471
_14795
Position (kb)
3274
3275
3276 Strain fitness (log2 ratio)
-1
0
1 at 3275.881 kb on + strand at 3275.882 kb on - strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.914 kb on + strand at 3275.914 kb on + strand at 3275.914 kb on + strand at 3276.098 kb on + strand, within AO353_14790 at 3276.743 kb on + strand at 3276.745 kb on + strand at 3276.854 kb on + strand, within AO353_14795
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 3,275,881 + -0.3 3,275,882 - -0.2 3,275,889 + +0.2 3,275,889 + -0.1 3,275,889 + +1.1 3,275,889 + +0.2 3,275,889 + +0.1 3,275,889 + +1.0 3,275,889 + +0.3 3,275,914 + -1.6 3,275,914 + +1.7 3,275,914 + +0.7 3,276,098 + AO353_14790 0.25 +0.4 3,276,743 + -1.1 3,276,745 + -1.4 3,276,854 + AO353_14795 0.18 -0.7
Or see this region's nucleotide sequence