Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14785

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14780 and AO353_14785 overlap by 4 nucleotidesAO353_14785 and AO353_14790 are separated by 0 nucleotidesAO353_14790 and AO353_14795 overlap by 7 nucleotides AO353_14780: AO353_14780 - glutamyl-tRNA reductase, at 3,273,523 to 3,274,812 _14780 AO353_14785: AO353_14785 - peptide chain release factor 1, at 3,274,809 to 3,275,891 _14785 AO353_14790: AO353_14790 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 3,275,892 to 3,276,722 _14790 AO353_14795: AO353_14795 - molybdopterin-synthase adenylyltransferase, at 3,276,716 to 3,277,471 _14795 Position (kb) 3274 3275 3276Strain fitness (log2 ratio) -1 0 1at 3275.881 kb on + strandat 3275.882 kb on - strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.889 kb on + strandat 3275.914 kb on + strandat 3275.914 kb on + strandat 3275.914 kb on + strandat 3276.098 kb on + strand, within AO353_14790at 3276.743 kb on + strandat 3276.745 kb on + strandat 3276.854 kb on + strand, within AO353_14795

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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3,275,881 + -0.3
3,275,882 - -0.2
3,275,889 + +0.2
3,275,889 + -0.1
3,275,889 + +1.1
3,275,889 + +0.2
3,275,889 + +0.1
3,275,889 + +1.0
3,275,889 + +0.3
3,275,914 + -1.6
3,275,914 + +1.7
3,275,914 + +0.7
3,276,098 + AO353_14790 0.25 +0.4
3,276,743 + -1.1
3,276,745 + -1.4
3,276,854 + AO353_14795 0.18 -0.7

Or see this region's nucleotide sequence