Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07750

Experiment: Carnitine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (C)
1,706,244	+		AO353_07745	0.22	-1.3
1,706,245	-		AO353_07745	0.22	-2.0
1,706,475	+		AO353_07745	0.48	-2.6
1,706,475	+		AO353_07745	0.48	-0.2
1,706,475	+		AO353_07745	0.48	-3.1
1,706,475	+		AO353_07745	0.48	-0.8
1,706,475	+		AO353_07745	0.48	-0.5
1,706,475	+		AO353_07745	0.48	-1.2
1,706,476	-		AO353_07745	0.48	-2.6
1,706,476	-		AO353_07745	0.48	-1.8
1,706,476	-		AO353_07745	0.48	-3.0
1,706,476	-		AO353_07745	0.48	-1.7
1,706,476	-		AO353_07745	0.48	-0.4
1,706,476	-		AO353_07745	0.48	-2.4
1,706,476	-		AO353_07745	0.48	-2.3
1,706,476	-		AO353_07745	0.48	-1.6
1,706,476	-		AO353_07745	0.48	-1.6
1,706,476	-		AO353_07745	0.48	-2.0
1,706,476	-		AO353_07745	0.48	-3.1
1,706,953	+				-1.1
1,706,953	+				+0.7
1,706,953	+				-0.3
1,706,953	+				-0.8
1,706,953	+				+0.9
1,706,953	+				+0.3
1,706,953	+				-0.4
1,706,954	-				-3.4
1,706,954	-				-1.5
1,706,954	-				-1.6
1,706,954	-				+1.0
1,706,954	-				-1.8
1,706,954	-				-2.9
1,706,954	-				-1.8
1,706,954	-				-2.8
1,706,954	-				-3.5
1,706,954	-				-3.0
1,706,962	+				+0.3
1,706,962	+				-0.0
1,706,962	+				+0.7
1,706,962	+				-1.3
1,706,963	-				-2.2
1,706,963	-				-2.7
1,706,963	-				-2.8
1,706,963	-				-0.8
1,706,963	-				-3.2
1,706,963	-				+0.2
1,706,963	-				-1.7
1,707,018	+				-1.0
1,707,038	+				-1.7
1,707,039	-				-1.5
1,707,039	-				-2.7
1,707,039	-				-1.9
1,707,120	+				-0.5
1,707,120	+				-1.0
1,707,120	+				-0.7
1,707,121	-				-1.3
1,707,121	-				-3.2
1,707,121	-				-1.8
1,707,121	-				-1.2
1,707,121	-				+1.0
1,707,137	+				+0.9
1,707,137	+				+0.3
1,707,138	-				-1.2
1,707,138	-				+0.8
1,707,164	-				-3.2
1,707,164	-				-3.8
1,707,537	-		AO353_07750	0.40	-0.8
1,707,537	-		AO353_07750	0.40	-3.7
1,707,537	-		AO353_07750	0.40	-1.9
1,707,593	+		AO353_07750	0.45	-2.2
1,707,594	-		AO353_07750	0.45	-3.0
1,707,594	-		AO353_07750	0.45	-0.2
1,707,669	-		AO353_07750	0.53	-2.3
1,707,693	+		AO353_07750	0.56	-2.8
1,707,693	+		AO353_07750	0.56	-3.5
1,707,694	-		AO353_07750	0.56	-1.7
1,707,694	-		AO353_07750	0.56	-3.0
1,707,694	-		AO353_07750	0.56	-1.1
1,707,863	+		AO353_07750	0.73	-0.8
1,707,863	+		AO353_07750	0.73	-1.0
1,707,863	+		AO353_07750	0.73	-2.9
1,707,863	+		AO353_07750	0.73	-4.0
1,707,863	+		AO353_07750	0.73	+0.0
1,707,863	+		AO353_07750	0.73	-1.1
1,707,863	+		AO353_07750	0.73	-1.3
1,707,864	-		AO353_07750	0.73	-0.4
1,707,864	-		AO353_07750	0.73	-2.4
1,707,864	-		AO353_07750	0.73	-3.3
1,707,864	-		AO353_07750	0.73	-1.3
1,707,864	-		AO353_07750	0.73	-3.3
1,707,941	+		AO353_07750	0.81	-0.8
1,707,941	+		AO353_07750	0.81	-0.4
1,707,941	+		AO353_07750	0.81	-2.0
1,707,941	+		AO353_07750	0.81	-2.1
1,707,941	+		AO353_07750	0.81	-1.8
1,707,941	+		AO353_07750	0.81	-2.9
1,707,941	+		AO353_07750	0.81	-1.0
1,707,941	+		AO353_07750	0.81	-0.8
1,707,941	+		AO353_07750	0.81	-0.6
1,707,942	-		AO353_07750	0.81	-1.1
1,707,942	-		AO353_07750	0.81	-4.1
1,707,942	-		AO353_07750	0.81	-1.3
1,708,128	-				-2.3
1,708,174	+				+1.6
1,708,195	+				-0.1
1,708,196	-				-1.9
1,708,196	-				-1.7
1,708,203	-				-2.5
1,708,203	-				-1.6
1,708,203	-				-3.2
1,708,203	-				-0.8
1,708,203	-				-2.6
1,708,203	-				-0.2
1,708,231	+				-0.3
1,708,232	-				-2.2
1,708,311	-				-2.5
1,708,311	-				-2.8
1,708,311	-				-2.5
1,708,311	-				-2.5
1,708,314	+				-1.9
1,708,314	+				-2.2
1,708,314	+				-0.8
1,708,314	+				+0.6
1,708,314	+				+0.1
1,708,314	+				-2.2
1,708,314	+				-3.0
1,708,314	+				-1.8
1,708,314	+				+0.1
1,708,314	+				-2.5
1,708,314	+				-0.9
1,708,314	+				-0.7
1,708,314	+				-3.6
1,708,314	+				-1.2
1,708,315	-				-0.7
1,708,315	-				-1.9
1,708,315	-				-1.3
1,708,315	-				-0.5
1,708,315	-				-0.8
1,708,315	-				-1.7
1,708,315	-				+0.3
1,708,315	-				-1.2
1,708,315	-				-1.6
1,708,315	-				-2.6
1,708,315	-				-2.0
1,708,315	-				-1.2
1,708,315	-				-2.4
1,708,315	-				-1.7
1,708,315	-				+0.6
1,708,315	-				-2.9
1,708,318	+				-1.9
1,708,318	+				-4.2
1,708,318	+				-3.5
1,708,318	+				-2.4
1,708,318	+				-3.3
1,708,318	+				-3.7
1,708,318	+				-3.4
1,708,318	+				-4.0
1,708,318	+				-1.6
1,708,318	+				-0.7
1,708,318	+				-0.7
1,708,318	+				-3.6
1,708,318	+				-1.3
1,708,318	+				-1.3
1,708,318	+				-0.4
1,708,318	+				-0.8
1,708,318	+				-0.5
1,708,318	+				+0.3
1,708,318	+				+0.1
1,708,319	-				-2.3
1,708,319	-				-1.9
1,708,319	-				-0.6
1,708,319	-				-0.2
1,708,319	-				-1.3
1,708,319	-				-1.1
1,708,319	-				-0.7
1,708,319	-				-4.1
1,708,319	-				-1.5
1,708,319	-				-2.5
1,708,319	-				-2.5
1,708,319	-				-2.4
1,708,319	-				+0.1
1,708,319	-				-3.7
1,708,319	-				-2.2
1,708,319	-				-0.4
1,708,319	-				-1.4
1,708,319	-				-0.8
1,708,319	-				-1.2
1,708,319	-				-0.7
1,708,319	-				-3.7
1,708,319	-				-0.4
1,708,319	-				-2.7
1,708,319	-				+1.1
1,708,319	-				-2.4
1,708,320	+				-1.5
1,708,320	+				-1.8
1,708,320	+				-3.5
1,708,321	-				-2.6
1,708,321	-				-1.1
1,708,321	-				-2.6
1,708,321	-				-0.9
1,708,321	-				-2.1
1,708,352	-		AO353_07755	0.11	-0.5
1,708,379	-		AO353_07755	0.17	-0.5
1,708,396	+		AO353_07755	0.20	+0.8
1,708,396	+		AO353_07755	0.20	-2.1
1,708,492	+		AO353_07755	0.40	-2.6
1,708,492	+		AO353_07755	0.40	-2.4
1,708,492	+		AO353_07755	0.40	-1.4
1,708,492	+		AO353_07755	0.40	-2.9
1,708,493	-		AO353_07755	0.40	-0.4
1,708,493	-		AO353_07755	0.40	-4.6
1,708,493	-		AO353_07755	0.40	-1.3
1,708,493	-		AO353_07755	0.40	-0.9
1,708,493	-		AO353_07755	0.40	-2.2
1,708,493	-		AO353_07755	0.40	-0.5
1,708,493	-		AO353_07755	0.40	-1.2
1,708,557	+		AO353_07755	0.54	-3.3
1,708,573	+		AO353_07755	0.57	-2.0
1,708,574	-		AO353_07755	0.57	-0.4
1,708,738	+				-1.3
1,708,738	+				-1.9
1,708,738	+				-2.7
1,708,738	+				-2.6
1,708,738	+				-1.2
1,708,738	+				-0.8
1,708,738	+				-2.5
1,708,738	+				-0.8
1,708,738	+				-1.7
1,708,738	+				-3.7
1,708,738	+				-3.6
1,708,738	+				-2.4
1,708,739	-				+0.2
1,708,739	-				-2.1
1,708,739	-				-1.5
1,708,739	-				-1.4
1,708,739	-				+0.6
1,708,739	-				-0.8
1,708,739	-				-2.1
1,708,741	-				+0.1
1,708,741	-				+0.6
1,708,774	+				-0.5
1,708,775	-				+1.1
1,708,834	+				-0.1
1,708,834	+				+1.6
1,708,835	-				+0.6
1,708,966	+		AO353_07760	0.14	-1.9
1,708,966	+		AO353_07760	0.14	-0.5
1,708,967	-		AO353_07760	0.15	+1.1
1,708,967	-		AO353_07760	0.15	-1.5
1,709,062	-		AO353_07760	0.23	+0.8
1,709,082	+		AO353_07760	0.24	+0.1
1,709,108	+		AO353_07760	0.27	+0.1
1,709,109	-		AO353_07760	0.27	+0.1
1,709,109	-		AO353_07760	0.27	+1.1