Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07715

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07710 and AO353_07715 are separated by 15 nucleotidesAO353_07715 and AO353_07720 are separated by 79 nucleotides AO353_07710: AO353_07710 - DgcA Dimethylglycine demethylase subunit A (from data), at 1,698,990 to 1,701,050 _07710 AO353_07715: AO353_07715 - hydrocarbon binding protein, at 1,701,066 to 1,701,596 _07715 AO353_07720: AO353_07720 - peptidase M19, at 1,701,676 to 1,702,653 _07720 Position (kb) 1701 1702Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1700.101 kb on + strand, within AO353_07710at 1700.102 kb on - strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.117 kb on + strand, within AO353_07710at 1700.118 kb on - strand, within AO353_07710at 1700.118 kb on - strand, within AO353_07710at 1700.118 kb on - strand, within AO353_07710at 1700.118 kb on - strand, within AO353_07710at 1700.118 kb on - strand, within AO353_07710at 1700.221 kb on + strand, within AO353_07710at 1700.314 kb on + strand, within AO353_07710at 1700.314 kb on + strand, within AO353_07710at 1700.314 kb on + strand, within AO353_07710at 1700.315 kb on - strand, within AO353_07710at 1700.315 kb on - strand, within AO353_07710at 1700.315 kb on - strand, within AO353_07710at 1700.317 kb on + strand, within AO353_07710at 1700.317 kb on + strand, within AO353_07710at 1700.317 kb on + strand, within AO353_07710at 1700.318 kb on - strand, within AO353_07710at 1700.318 kb on - strand, within AO353_07710at 1700.318 kb on - strand, within AO353_07710at 1700.381 kb on + strand, within AO353_07710at 1700.381 kb on + strand, within AO353_07710at 1700.382 kb on - strand, within AO353_07710at 1700.417 kb on + strand, within AO353_07710at 1700.418 kb on - strand, within AO353_07710at 1700.487 kb on - strand, within AO353_07710at 1700.596 kb on + strand, within AO353_07710at 1700.597 kb on - strand, within AO353_07710at 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.917 kb on + strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.918 kb on - strandat 1700.920 kb on + strandat 1700.920 kb on + strandat 1700.920 kb on + strandat 1700.920 kb on + strandat 1700.920 kb on + strandat 1700.921 kb on - strandat 1700.921 kb on - strandat 1700.930 kb on - strandat 1700.962 kb on + strandat 1701.067 kb on + strandat 1701.067 kb on + strandat 1701.067 kb on + strandat 1701.068 kb on - strandat 1701.068 kb on - strandat 1701.121 kb on + strand, within AO353_07715at 1701.121 kb on + strand, within AO353_07715at 1701.122 kb on - strand, within AO353_07715at 1701.122 kb on - strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.208 kb on + strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.209 kb on - strand, within AO353_07715at 1701.235 kb on + strand, within AO353_07715at 1701.242 kb on - strand, within AO353_07715at 1701.242 kb on - strand, within AO353_07715at 1701.242 kb on - strand, within AO353_07715at 1701.346 kb on + strand, within AO353_07715at 1701.346 kb on + strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.347 kb on - strand, within AO353_07715at 1701.422 kb on - strand, within AO353_07715at 1701.433 kb on + strand, within AO353_07715at 1701.433 kb on + strand, within AO353_07715at 1701.433 kb on + strand, within AO353_07715at 1701.434 kb on - strand, within AO353_07715at 1701.434 kb on - strand, within AO353_07715at 1701.434 kb on - strand, within AO353_07715at 1701.434 kb on - strand, within AO353_07715at 1701.448 kb on + strand, within AO353_07715at 1701.449 kb on - strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.514 kb on + strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.515 kb on - strand, within AO353_07715at 1701.605 kb on - strandat 1701.605 kb on - strandat 1701.605 kb on - strandat 1701.667 kb on + strandat 1701.668 kb on - strandat 1701.668 kb on - strandat 1701.677 kb on + strandat 1701.677 kb on + strandat 1701.678 kb on - strandat 1701.678 kb on - strandat 1701.736 kb on + strandat 1701.737 kb on - strandat 1701.852 kb on - strand, within AO353_07720at 1701.873 kb on - strand, within AO353_07720at 1701.954 kb on - strand, within AO353_07720at 1701.954 kb on - strand, within AO353_07720at 1701.954 kb on - strand, within AO353_07720at 1701.954 kb on - strand, within AO353_07720at 1701.954 kb on - strand, within AO353_07720at 1701.972 kb on - strand, within AO353_07720at 1701.993 kb on + strand, within AO353_07720at 1701.994 kb on - strand, within AO353_07720at 1702.121 kb on + strand, within AO353_07720at 1702.121 kb on + strand, within AO353_07720at 1702.121 kb on + strand, within AO353_07720at 1702.121 kb on + strand, within AO353_07720at 1702.122 kb on - strand, within AO353_07720at 1702.122 kb on - strand, within AO353_07720at 1702.122 kb on - strand, within AO353_07720at 1702.262 kb on + strand, within AO353_07720at 1702.262 kb on + strand, within AO353_07720at 1702.262 kb on + strand, within AO353_07720at 1702.263 kb on - strand, within AO353_07720at 1702.263 kb on - strand, within AO353_07720at 1702.263 kb on - strand, within AO353_07720at 1702.263 kb on - strand, within AO353_07720at 1702.295 kb on + strandat 1702.295 kb on + strandat 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.295 kb on + strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.296 kb on - strand, within AO353_07720at 1702.312 kb on - strand, within AO353_07720at 1702.343 kb on + strand, within AO353_07720at 1702.343 kb on + strand, within AO353_07720at 1702.343 kb on + strand, within AO353_07720at 1702.344 kb on - strand, within AO353_07720at 1702.344 kb on - strand, within AO353_07720at 1702.344 kb on - strand, within AO353_07720at 1702.569 kb on + strandat 1702.569 kb on + strandat 1702.569 kb on + strandat 1702.570 kb on - strandat 1702.570 kb on - strandat 1702.570 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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1,700,101 + AO353_07710 0.54 -0.4
1,700,102 - AO353_07710 0.54 -2.2
1,700,117 + AO353_07710 0.55 -3.2
1,700,117 + AO353_07710 0.55 -1.4
1,700,117 + AO353_07710 0.55 -1.4
1,700,117 + AO353_07710 0.55 -2.2
1,700,117 + AO353_07710 0.55 -3.0
1,700,117 + AO353_07710 0.55 -0.5
1,700,118 - AO353_07710 0.55 -1.8
1,700,118 - AO353_07710 0.55 -2.7
1,700,118 - AO353_07710 0.55 -0.9
1,700,118 - AO353_07710 0.55 -2.7
1,700,118 - AO353_07710 0.55 -1.8
1,700,221 + AO353_07710 0.60 -0.4
1,700,314 + AO353_07710 0.64 -2.7
1,700,314 + AO353_07710 0.64 -2.9
1,700,314 + AO353_07710 0.64 -2.5
1,700,315 - AO353_07710 0.64 -1.7
1,700,315 - AO353_07710 0.64 -0.4
1,700,315 - AO353_07710 0.64 -1.3
1,700,317 + AO353_07710 0.64 -1.6
1,700,317 + AO353_07710 0.64 -1.4
1,700,317 + AO353_07710 0.64 -3.0
1,700,318 - AO353_07710 0.64 -1.5
1,700,318 - AO353_07710 0.64 -2.9
1,700,318 - AO353_07710 0.64 +0.4
1,700,381 + AO353_07710 0.67 -0.7
1,700,381 + AO353_07710 0.67 -1.8
1,700,382 - AO353_07710 0.68 -0.5
1,700,417 + AO353_07710 0.69 -2.7
1,700,418 - AO353_07710 0.69 -1.6
1,700,487 - AO353_07710 0.73 -0.8
1,700,596 + AO353_07710 0.78 -3.2
1,700,597 - AO353_07710 0.78 -2.4
1,700,917 + -0.5
1,700,917 + -0.7
1,700,917 + -3.0
1,700,917 + -2.6
1,700,917 + -2.7
1,700,917 + -2.7
1,700,917 + -0.5
1,700,918 - -0.5
1,700,918 - -1.9
1,700,918 - -1.5
1,700,918 - -3.6
1,700,918 - -1.0
1,700,918 - -1.1
1,700,918 - -3.6
1,700,920 + -1.1
1,700,920 + -0.4
1,700,920 + -0.4
1,700,920 + -3.4
1,700,920 + -2.2
1,700,921 - -3.3
1,700,921 - -3.6
1,700,930 - -2.2
1,700,962 + -1.8
1,701,067 + -2.3
1,701,067 + -1.1
1,701,067 + -3.2
1,701,068 - -3.2
1,701,068 - -1.5
1,701,121 + AO353_07715 0.10 -2.8
1,701,121 + AO353_07715 0.10 -0.7
1,701,122 - AO353_07715 0.11 -2.5
1,701,122 - AO353_07715 0.11 -0.5
1,701,208 + AO353_07715 0.27 -1.2
1,701,208 + AO353_07715 0.27 -3.3
1,701,208 + AO353_07715 0.27 -2.2
1,701,208 + AO353_07715 0.27 -2.0
1,701,208 + AO353_07715 0.27 -1.6
1,701,208 + AO353_07715 0.27 -2.2
1,701,209 - AO353_07715 0.27 -0.4
1,701,209 - AO353_07715 0.27 -2.1
1,701,209 - AO353_07715 0.27 -2.8
1,701,209 - AO353_07715 0.27 -1.7
1,701,209 - AO353_07715 0.27 -2.8
1,701,209 - AO353_07715 0.27 -1.8
1,701,235 + AO353_07715 0.32 -2.1
1,701,242 - AO353_07715 0.33 -0.2
1,701,242 - AO353_07715 0.33 -2.8
1,701,242 - AO353_07715 0.33 -0.8
1,701,346 + AO353_07715 0.53 -0.5
1,701,346 + AO353_07715 0.53 -0.7
1,701,347 - AO353_07715 0.53 -1.1
1,701,347 - AO353_07715 0.53 -3.0
1,701,347 - AO353_07715 0.53 -1.8
1,701,347 - AO353_07715 0.53 -2.3
1,701,347 - AO353_07715 0.53 -2.3
1,701,347 - AO353_07715 0.53 +1.0
1,701,422 - AO353_07715 0.67 -1.5
1,701,433 + AO353_07715 0.69 -1.8
1,701,433 + AO353_07715 0.69 +0.3
1,701,433 + AO353_07715 0.69 -1.9
1,701,434 - AO353_07715 0.69 -3.2
1,701,434 - AO353_07715 0.69 -0.7
1,701,434 - AO353_07715 0.69 -2.5
1,701,434 - AO353_07715 0.69 -1.5
1,701,448 + AO353_07715 0.72 -3.0
1,701,449 - AO353_07715 0.72 -2.0
1,701,514 + AO353_07715 0.84 -1.9
1,701,514 + AO353_07715 0.84 -1.3
1,701,514 + AO353_07715 0.84 -1.8
1,701,514 + AO353_07715 0.84 -0.2
1,701,514 + AO353_07715 0.84 -1.3
1,701,514 + AO353_07715 0.84 -2.2
1,701,514 + AO353_07715 0.84 -1.3
1,701,514 + AO353_07715 0.84 -2.0
1,701,514 + AO353_07715 0.84 -2.3
1,701,514 + AO353_07715 0.84 -0.4
1,701,515 - AO353_07715 0.85 -0.8
1,701,515 - AO353_07715 0.85 -0.2
1,701,515 - AO353_07715 0.85 -0.8
1,701,515 - AO353_07715 0.85 -1.9
1,701,515 - AO353_07715 0.85 -1.0
1,701,515 - AO353_07715 0.85 -2.4
1,701,515 - AO353_07715 0.85 -1.1
1,701,515 - AO353_07715 0.85 -0.2
1,701,515 - AO353_07715 0.85 -2.4
1,701,515 - AO353_07715 0.85 -0.4
1,701,515 - AO353_07715 0.85 -2.3
1,701,515 - AO353_07715 0.85 -2.1
1,701,605 - -1.6
1,701,605 - -0.8
1,701,605 - -1.5
1,701,667 + -1.0
1,701,668 - -0.9
1,701,668 - -1.1
1,701,677 + -3.1
1,701,677 + -2.2
1,701,678 - +1.0
1,701,678 - -0.2
1,701,736 + -1.4
1,701,737 - -0.8
1,701,852 - AO353_07720 0.18 -1.0
1,701,873 - AO353_07720 0.20 -2.5
1,701,954 - AO353_07720 0.28 -1.6
1,701,954 - AO353_07720 0.28 -1.0
1,701,954 - AO353_07720 0.28 -3.0
1,701,954 - AO353_07720 0.28 -0.2
1,701,954 - AO353_07720 0.28 -2.7
1,701,972 - AO353_07720 0.30 -0.8
1,701,993 + AO353_07720 0.32 -3.1
1,701,994 - AO353_07720 0.33 -1.0
1,702,121 + AO353_07720 0.46 +0.0
1,702,121 + AO353_07720 0.46 -0.8
1,702,121 + AO353_07720 0.46 -1.0
1,702,121 + AO353_07720 0.46 -1.7
1,702,122 - AO353_07720 0.46 -1.5
1,702,122 - AO353_07720 0.46 -2.2
1,702,122 - AO353_07720 0.46 -1.0
1,702,262 + AO353_07720 0.60 -1.0
1,702,262 + AO353_07720 0.60 -1.9
1,702,262 + AO353_07720 0.60 -3.9
1,702,263 - AO353_07720 0.60 -0.7
1,702,263 - AO353_07720 0.60 -2.1
1,702,263 - AO353_07720 0.60 +0.0
1,702,263 - AO353_07720 0.60 -0.8
1,702,295 + +0.3
1,702,295 + +1.0
1,702,295 + AO353_07720 0.63 -1.5
1,702,295 + AO353_07720 0.63 -1.1
1,702,295 + AO353_07720 0.63 -2.7
1,702,295 + AO353_07720 0.63 -1.4
1,702,295 + AO353_07720 0.63 -1.2
1,702,295 + AO353_07720 0.63 -1.6
1,702,295 + AO353_07720 0.63 -1.3
1,702,295 + AO353_07720 0.63 -2.3
1,702,295 + AO353_07720 0.63 +0.9
1,702,295 + AO353_07720 0.63 -1.5
1,702,296 - AO353_07720 0.63 +2.0
1,702,296 - AO353_07720 0.63 -2.5
1,702,296 - AO353_07720 0.63 -2.0
1,702,296 - AO353_07720 0.63 -1.8
1,702,296 - AO353_07720 0.63 -1.1
1,702,296 - AO353_07720 0.63 -1.7
1,702,312 - AO353_07720 0.65 -1.3
1,702,343 + AO353_07720 0.68 -1.7
1,702,343 + AO353_07720 0.68 -1.8
1,702,343 + AO353_07720 0.68 -3.0
1,702,344 - AO353_07720 0.68 -2.1
1,702,344 - AO353_07720 0.68 -2.1
1,702,344 - AO353_07720 0.68 -1.2
1,702,569 + -2.5
1,702,569 + -1.6
1,702,569 + -1.7
1,702,570 - -2.1
1,702,570 - -1.4
1,702,570 - -0.0

Or see this region's nucleotide sequence