Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05065

Experiment: Carnitine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (C)
1,115,403	+				+0.2
1,115,403	+				+0.6
1,115,403	+				+0.5
1,115,403	+				+0.4
1,115,403	+				+0.1
1,115,403	+				-1.9
1,115,403	+				+0.8
1,115,404	-				+1.8
1,115,404	-				-0.9
1,115,404	-				+0.6
1,115,404	-				+0.6
1,115,404	-				-1.6
1,115,404	-				-0.4
1,115,404	-				+1.1
1,115,404	-				+0.7
1,115,404	-				-1.0
1,115,404	-				+1.1
1,115,497	-				-0.5
1,115,537	+				-0.1
1,115,537	+				+0.4
1,115,538	-				+0.9
1,115,538	-				+0.4
1,115,823	+		AO353_05055	0.56	+2.0
1,115,823	+		AO353_05055	0.56	-0.1
1,115,823	+		AO353_05055	0.56	-1.1
1,115,824	-		AO353_05055	0.57	+0.1
1,115,832	+		AO353_05055	0.58	+0.4
1,115,832	+		AO353_05055	0.58	+0.0
1,115,850	-		AO353_05055	0.62	-1.1
1,115,850	-		AO353_05055	0.62	-0.0
1,115,850	-		AO353_05055	0.62	+0.0
1,115,850	-		AO353_05055	0.62	+0.5
1,115,850	-		AO353_05055	0.62	+0.4
1,115,881	+		AO353_05055	0.68	+0.4
1,115,882	-		AO353_05055	0.69	+0.7
1,115,882	-		AO353_05055	0.69	-0.7
1,115,917	+		AO353_05055	0.76	+0.6
1,115,917	+		AO353_05055	0.76	+0.9
1,115,917	+		AO353_05055	0.76	-0.5
1,115,918	-		AO353_05055	0.76	+0.8
1,115,918	-		AO353_05055	0.76	+1.6
1,115,918	-		AO353_05055	0.76	-1.0
1,115,934	+		AO353_05055	0.79	-1.2
1,115,934	+		AO353_05055	0.79	+0.6
1,115,934	+		AO353_05055	0.79	+1.0
1,115,934	+		AO353_05055	0.79	+0.6
1,115,935	-		AO353_05055	0.79	-0.6
1,115,995	+				-1.6
1,115,995	+				+0.8
1,115,995	+				+0.6
1,115,995	+				+1.9
1,115,996	-				-1.0
1,115,997	+				+0.4
1,115,998	-				-1.4
1,115,998	-				-0.0
1,115,998	-				+1.1
1,115,998	-				-0.1
1,116,016	+				+0.9
1,116,016	+				-0.6
1,116,017	-				+0.5
1,116,017	-				-0.1
1,116,053	+				+0.5
1,116,053	+				-0.5
1,116,053	+				+0.4
1,116,060	-				-0.4
1,116,061	+				+0.5
1,116,061	+				-0.2
1,116,061	+				+1.0
1,116,061	+				+1.0
1,116,061	+				+1.4
1,116,062	-				-0.2
1,116,181	+		AO353_05060	0.48	+0.7
1,116,181	+		AO353_05060	0.48	+0.5
1,116,181	+		AO353_05060	0.48	+0.3
1,116,181	+		AO353_05060	0.48	+1.7
1,116,181	+		AO353_05060	0.48	-1.1
1,116,182	-		AO353_05060	0.48	-1.0
1,116,182	-		AO353_05060	0.48	-0.0
1,116,182	-		AO353_05060	0.48	-1.2
1,116,182	-		AO353_05060	0.48	+0.9
1,116,266	+		AO353_05060	0.75	+0.1
1,116,267	-		AO353_05060	0.76	+2.0
1,116,277	+		AO353_05060	0.79	+0.3
1,116,351	-				-1.0
1,116,364	+				-0.4
1,116,364	+				+0.5
1,116,365	-				-1.6
1,116,365	-				-2.7
1,116,470	+				-1.7
1,116,470	+				-2.2
1,116,470	+				-1.7
1,116,470	+				-0.6
1,116,471	-				-0.6
1,116,474	+				-2.6
1,116,474	+				-1.0
1,116,474	+				-2.6
1,116,474	+				-2.3
1,116,474	+				+0.7
1,116,474	+				-3.1
1,116,475	-				-2.6
1,116,475	-				-1.2
1,116,475	-				+0.2
1,116,679	+		AO353_05065	0.13	-2.6
1,116,680	-		AO353_05065	0.13	+2.1
1,116,680	-		AO353_05065	0.13	-1.0
1,116,680	-		AO353_05065	0.13	-0.9
1,116,680	-		AO353_05065	0.13	-1.4
1,116,748	+		AO353_05065	0.16	-1.8
1,116,748	+		AO353_05065	0.16	-1.9
1,116,749	-		AO353_05065	0.16	-3.5
1,117,096	+		AO353_05065	0.33	-0.6
1,117,472	+		AO353_05065	0.51	-0.6
1,117,473	-		AO353_05065	0.51	-1.1
1,117,473	-		AO353_05065	0.51	-2.8
1,117,601	+		AO353_05065	0.57	-1.2
1,117,602	-		AO353_05065	0.57	-2.6
1,117,750	+		AO353_05065	0.64	-2.2
1,117,750	+		AO353_05065	0.64	-1.3
1,117,750	+		AO353_05065	0.64	-0.4
1,117,751	-		AO353_05065	0.64	-0.6
1,117,751	-		AO353_05065	0.64	-0.6
1,117,751	-		AO353_05065	0.64	-1.4
1,118,002	+		AO353_05065	0.76	-1.0
1,118,002	+		AO353_05065	0.76	-0.8
1,118,002	+		AO353_05065	0.76	-1.0
1,118,119	+		AO353_05065	0.82	-0.8
1,118,120	-		AO353_05065	0.82	-0.4
1,118,120	-		AO353_05065	0.82	-2.4
1,118,120	-		AO353_05065	0.82	+0.4
1,118,227	+		AO353_05065	0.87	-2.6
1,118,227	+		AO353_05065	0.87	-2.1
1,118,228	-		AO353_05065	0.87	-2.5
1,118,228	-		AO353_05065	0.87	-0.5
1,118,228	-		AO353_05065	0.87	-1.2
1,118,228	-		AO353_05065	0.87	+0.4
1,118,409	-				-1.9
1,118,409	-				-2.6
1,118,449	+				-0.1
1,118,449	+				-1.5
1,118,449	+				-1.4
1,118,449	+				-1.6
1,118,450	-				-1.9
1,118,450	-				-1.1
1,118,500	+				-0.4
1,118,500	+				-0.2
1,118,500	+				-0.5
1,118,500	+				-1.4
1,118,500	+				+1.1
1,118,500	+				-0.8
1,118,500	+				+0.6
1,118,500	+				-0.1
1,118,500	+				-1.2
1,118,501	-				-0.3
1,118,501	-				-0.7
1,118,501	-				+0.4
1,118,501	-				-0.1
1,118,501	-				-0.5
1,118,516	+				+0.1
1,118,755	+		AO353_05070	0.28	+1.1
1,118,755	+		AO353_05070	0.28	+0.9
1,118,755	+		AO353_05070	0.28	-0.8
1,118,767	+		AO353_05070	0.29	-0.2
1,118,767	+		AO353_05070	0.29	+3.4
1,118,767	+		AO353_05070	0.29	-1.0
1,118,818	+		AO353_05070	0.35	+1.1
1,118,818	+		AO353_05070	0.35	-1.2
1,118,818	+		AO353_05070	0.35	-0.6
1,118,818	+		AO353_05070	0.35	+0.2
1,118,819	-		AO353_05070	0.35	-0.0
1,118,819	-		AO353_05070	0.35	-0.9
1,118,819	-		AO353_05070	0.35	+0.2
1,118,819	-		AO353_05070	0.35	+0.6
1,118,933	-		AO353_05070	0.47	-2.5
1,118,933	-		AO353_05070	0.47	+0.2
1,118,944	+		AO353_05070	0.49	-0.7
1,119,101	-		AO353_05070	0.66	+0.9
1,119,298	+		AO353_05070	0.87	+0.5
1,119,298	+		AO353_05070	0.87	+1.4
1,119,298	+		AO353_05070	0.87	-0.4
1,119,299	-		AO353_05070	0.88	-1.1
1,119,299	-		AO353_05070	0.88	+0.4
1,119,299	-		AO353_05070	0.88	+0.1
1,119,299	-		AO353_05070	0.88	-1.8
1,119,299	-		AO353_05070	0.88	+0.8
1,119,299	-		AO353_05070	0.88	+0.4
1,119,299	-		AO353_05070	0.88	-1.7
1,119,394	+				+0.7
1,119,480	+				+0.7
1,119,480	+				+0.4
1,119,481	-				+0.2