Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01850

Experiment: Carnitine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01845 and AO353_01850 are separated by 3 nucleotidesAO353_01850 and AO353_01855 overlap by 7 nucleotidesAO353_01855 and AO353_01860 are separated by 480 nucleotides AO353_01845: AO353_01845 - succinate dehydrogenase, at 389,128 to 390,903 _01845 AO353_01850: AO353_01850 - succinate dehydrogenase, at 390,907 to 391,275 _01850 AO353_01855: AO353_01855 - succinate dehydrogenase, at 391,269 to 391,526 _01855 AO353_01860: AO353_01860 - type II citrate synthase, at 392,007 to 393,296 _01860 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 391.781 kb on - strandat 391.783 kb on - strandat 391.824 kb on - strandat 391.826 kb on + strandat 391.827 kb on - strandat 391.827 kb on - strandat 391.914 kb on - strandat 391.935 kb on + strandat 391.943 kb on + strandat 391.943 kb on + strandat 391.943 kb on + strandat 391.945 kb on + strandat 391.945 kb on + strandat 391.992 kb on + strandat 391.992 kb on + strandat 391.996 kb on + strandat 391.996 kb on + strandat 391.996 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
remove
391,781 - -1.5
391,783 - -0.9
391,824 - -0.0
391,826 + +1.0
391,827 - -0.5
391,827 - -3.2
391,914 - +0.8
391,935 + +2.0
391,943 + -0.1
391,943 + -0.1
391,943 + +1.2
391,945 + +0.2
391,945 + +0.7
391,992 + +0.6
391,992 + -0.1
391,996 + +0.3
391,996 + +0.1
391,996 + -1.5

Or see this region's nucleotide sequence