Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3469 and Shewana3_3470 are separated by 200 nucleotides Shewana3_3470 and Shewana3_3471 are separated by 60 nucleotides
Shewana3_3469: Shewana3_3469 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq), at 4,159,363 to 4,161,633
_3469
Shewana3_3470: Shewana3_3470 - LysR family transcriptional regulator (RefSeq), at 4,161,834 to 4,162,739
_3470
Shewana3_3471: Shewana3_3471 - putative signal transduction protein (RefSeq), at 4,162,800 to 4,163,528
_3471
Position (kb) 4161
4162
4163 Strain fitness (log2 ratio) -1
0
1 at 4161.024 kb on + strand, within Shewana3_3469 at 4161.040 kb on - strand, within Shewana3_3469 at 4161.133 kb on - strand, within Shewana3_3469 at 4161.175 kb on - strand, within Shewana3_3469 at 4161.245 kb on - strand, within Shewana3_3469 at 4161.263 kb on - strand, within Shewana3_3469 at 4161.337 kb on + strand, within Shewana3_3469 at 4161.622 kb on + strand at 4161.859 kb on + strand at 4162.026 kb on + strand, within Shewana3_3470 at 4162.026 kb on - strand, within Shewana3_3470 at 4162.120 kb on - strand, within Shewana3_3470 at 4162.150 kb on + strand, within Shewana3_3470 at 4162.150 kb on + strand, within Shewana3_3470 at 4162.266 kb on + strand, within Shewana3_3470 at 4162.273 kb on + strand, within Shewana3_3470 at 4162.281 kb on - strand, within Shewana3_3470 at 4162.375 kb on + strand, within Shewana3_3470 at 4162.531 kb on + strand, within Shewana3_3470 at 4162.541 kb on - strand, within Shewana3_3470 at 4162.621 kb on + strand, within Shewana3_3470 at 4162.665 kb on + strand at 4162.710 kb on + strand at 4162.710 kb on + strand at 4162.718 kb on - strand at 4162.894 kb on - strand, within Shewana3_3471 at 4163.068 kb on + strand, within Shewana3_3471 at 4163.093 kb on - strand, within Shewana3_3471 at 4163.116 kb on - strand, within Shewana3_3471 at 4163.133 kb on + strand, within Shewana3_3471 at 4163.320 kb on + strand, within Shewana3_3471 at 4163.535 kb on + strand at 4163.580 kb on + strand at 4163.645 kb on - strand at 4163.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 4,161,024 + Shewana3_3469 0.73 +0.2 4,161,040 - Shewana3_3469 0.74 +0.9 4,161,133 - Shewana3_3469 0.78 -0.4 4,161,175 - Shewana3_3469 0.80 +0.2 4,161,245 - Shewana3_3469 0.83 +0.7 4,161,263 - Shewana3_3469 0.84 -0.0 4,161,337 + Shewana3_3469 0.87 +0.5 4,161,622 + -0.0 4,161,859 + -0.5 4,162,026 + Shewana3_3470 0.21 -0.4 4,162,026 - Shewana3_3470 0.21 -0.1 4,162,120 - Shewana3_3470 0.32 +0.2 4,162,150 + Shewana3_3470 0.35 -1.6 4,162,150 + Shewana3_3470 0.35 -0.6 4,162,266 + Shewana3_3470 0.48 -0.6 4,162,273 + Shewana3_3470 0.48 +0.2 4,162,281 - Shewana3_3470 0.49 -0.8 4,162,375 + Shewana3_3470 0.60 -1.1 4,162,531 + Shewana3_3470 0.77 -0.4 4,162,541 - Shewana3_3470 0.78 -0.2 4,162,621 + Shewana3_3470 0.87 +0.3 4,162,665 + -0.2 4,162,710 + +0.0 4,162,710 + +0.0 4,162,718 - -0.1 4,162,894 - Shewana3_3471 0.13 -0.2 4,163,068 + Shewana3_3471 0.37 +0.1 4,163,093 - Shewana3_3471 0.40 +0.4 4,163,116 - Shewana3_3471 0.43 +0.5 4,163,133 + Shewana3_3471 0.46 +0.3 4,163,320 + Shewana3_3471 0.71 +0.1 4,163,535 + +0.0 4,163,580 + -1.0 4,163,645 - -0.4 4,163,684 - +0.1
Or see this region's nucleotide sequence