Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3201

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3200 and Shewana3_3201 are separated by 385 nucleotidesShewana3_3201 and Shewana3_3202 are separated by 46 nucleotidesShewana3_3202 and djlA are separated by 55 nucleotides Shewana3_3200: Shewana3_3200 - hypothetical protein (RefSeq), at 3,842,938 to 3,843,972 _3200 Shewana3_3201: Shewana3_3201 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 3,844,358 to 3,845,311 _3201 Shewana3_3202: Shewana3_3202 - hypothetical protein (RefSeq), at 3,845,358 to 3,846,002 _3202 Shewana3_3203: djlA - Dna-J like membrane chaperone protein (RefSeq), at 3,846,058 to 3,846,846 djlA Position (kb) 3844 3845 3846Strain fitness (log2 ratio) -2 -1 0 1 2at 3843.387 kb on + strand, within Shewana3_3200at 3843.482 kb on - strand, within Shewana3_3200at 3843.948 kb on - strandat 3843.984 kb on - strandat 3844.124 kb on - strandat 3844.222 kb on - strandat 3844.687 kb on + strand, within Shewana3_3201at 3844.873 kb on - strand, within Shewana3_3201at 3844.944 kb on + strand, within Shewana3_3201at 3844.944 kb on + strand, within Shewana3_3201at 3844.952 kb on - strand, within Shewana3_3201at 3845.041 kb on + strand, within Shewana3_3201at 3845.056 kb on - strand, within Shewana3_3201at 3845.088 kb on - strand, within Shewana3_3201at 3845.706 kb on - strand, within Shewana3_3202at 3845.910 kb on - strand, within Shewana3_3202at 3845.952 kb on + strandat 3845.959 kb on - strandat 3846.088 kb on + strandat 3846.088 kb on + strandat 3846.088 kb on + strandat 3846.096 kb on - strandat 3846.137 kb on + strand, within djlA

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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3,843,387 + Shewana3_3200 0.43 +0.4
3,843,482 - Shewana3_3200 0.53 +0.3
3,843,948 - -1.1
3,843,984 - +0.7
3,844,124 - +0.5
3,844,222 - -0.1
3,844,687 + Shewana3_3201 0.34 +0.1
3,844,873 - Shewana3_3201 0.54 +0.3
3,844,944 + Shewana3_3201 0.61 -2.5
3,844,944 + Shewana3_3201 0.61 +0.1
3,844,952 - Shewana3_3201 0.62 +0.5
3,845,041 + Shewana3_3201 0.72 +0.3
3,845,056 - Shewana3_3201 0.73 -0.7
3,845,088 - Shewana3_3201 0.77 +0.5
3,845,706 - Shewana3_3202 0.54 +2.1
3,845,910 - Shewana3_3202 0.86 -0.4
3,845,952 + +1.2
3,845,959 - -0.8
3,846,088 + +1.1
3,846,088 + +0.7
3,846,088 + -0.3
3,846,096 - -0.2
3,846,137 + djlA Shewana3_3203 0.10 -0.7

Or see this region's nucleotide sequence