Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3065 and Shewana3_3066 are separated by 19 nucleotides Shewana3_3066 and Shewana3_3067 are separated by 127 nucleotides Shewana3_3067 and Shewana3_3068 overlap by 8 nucleotides Shewana3_3068 and Shewana3_3069 are separated by 74 nucleotides
Shewana3_3065: Shewana3_3065 - hypothetical protein (RefSeq), at 3,678,088 to 3,678,468
_3065
Shewana3_3066: Shewana3_3066 - hypothetical protein (RefSeq), at 3,678,488 to 3,678,943
_3066
Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421
_3067
Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220
_3068
Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019
_3069
Position (kb)
3679
3680
3681 Strain fitness (log2 ratio)
-1
0
1 at 3678.463 kb on + strand at 3678.538 kb on - strand, within Shewana3_3066 at 3678.583 kb on + strand, within Shewana3_3066 at 3678.679 kb on + strand, within Shewana3_3066 at 3678.741 kb on - strand, within Shewana3_3066 at 3678.754 kb on - strand, within Shewana3_3066 at 3678.907 kb on + strand at 3679.532 kb on - strand, within Shewana3_3068 at 3679.551 kb on + strand, within Shewana3_3068 at 3679.620 kb on + strand, within Shewana3_3068 at 3679.626 kb on - strand, within Shewana3_3068 at 3679.732 kb on - strand, within Shewana3_3068 at 3679.747 kb on + strand, within Shewana3_3068 at 3679.755 kb on - strand, within Shewana3_3068 at 3679.883 kb on - strand, within Shewana3_3068 at 3680.102 kb on - strand, within Shewana3_3068 at 3680.106 kb on + strand, within Shewana3_3068 at 3680.232 kb on - strand at 3680.278 kb on - strand at 3680.278 kb on - strand at 3680.285 kb on + strand at 3680.285 kb on + strand at 3680.293 kb on - strand at 3680.388 kb on + strand at 3680.496 kb on - strand, within Shewana3_3069 at 3680.636 kb on - strand, within Shewana3_3069 at 3680.878 kb on - strand, within Shewana3_3069 at 3680.930 kb on - strand, within Shewana3_3069 at 3680.935 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.066 kb on + strand, within Shewana3_3069 at 3681.069 kb on - strand, within Shewana3_3069 at 3681.112 kb on - strand, within Shewana3_3069 at 3681.131 kb on - strand, within Shewana3_3069 at 3681.191 kb on - strand, within Shewana3_3069
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 3,678,463 + -0.4 3,678,538 - Shewana3_3066 0.11 +0.1 3,678,583 + Shewana3_3066 0.21 -0.4 3,678,679 + Shewana3_3066 0.42 +0.6 3,678,741 - Shewana3_3066 0.55 -0.6 3,678,754 - Shewana3_3066 0.58 +0.1 3,678,907 + -0.3 3,679,532 - Shewana3_3068 0.15 +0.1 3,679,551 + Shewana3_3068 0.17 -0.0 3,679,620 + Shewana3_3068 0.26 +1.5 3,679,626 - Shewana3_3068 0.26 +0.5 3,679,732 - Shewana3_3068 0.39 -0.0 3,679,747 + Shewana3_3068 0.41 +1.4 3,679,755 - Shewana3_3068 0.42 -0.6 3,679,883 - Shewana3_3068 0.58 +0.6 3,680,102 - Shewana3_3068 0.85 +0.9 3,680,106 + Shewana3_3068 0.86 +0.2 3,680,232 - +0.1 3,680,278 - -0.6 3,680,278 - -0.7 3,680,285 + +0.4 3,680,285 + +0.5 3,680,293 - -0.7 3,680,388 + +0.4 3,680,496 - Shewana3_3069 0.12 +0.1 3,680,636 - Shewana3_3069 0.20 +0.1 3,680,878 - Shewana3_3069 0.34 -0.0 3,680,930 - Shewana3_3069 0.37 +0.4 3,680,935 + Shewana3_3069 0.37 -1.1 3,681,061 + Shewana3_3069 0.44 -0.2 3,681,061 + Shewana3_3069 0.44 +0.6 3,681,066 + Shewana3_3069 0.45 -0.9 3,681,069 - Shewana3_3069 0.45 -0.0 3,681,112 - Shewana3_3069 0.47 +0.1 3,681,131 - Shewana3_3069 0.48 +0.0 3,681,191 - Shewana3_3069 0.52 +0.8
Or see this region's nucleotide sequence