Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2933 and Shewana3_2934 overlap by 4 nucleotides Shewana3_2934 and Shewana3_2935 are separated by 17 nucleotides
Shewana3_2933: Shewana3_2933 - glycogen debranching enzyme GlgX (RefSeq), at 3,519,425 to 3,521,683
_2933
Shewana3_2934: Shewana3_2934 - glycogen branching enzyme (RefSeq), at 3,521,680 to 3,523,917
_2934
Shewana3_2935: Shewana3_2935 - 4-alpha-glucanotransferase (RefSeq), at 3,523,935 to 3,526,340
_2935
Position (kb)
3521
3522
3523
3524 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3520.791 kb on + strand, within Shewana3_2933 at 3521.025 kb on + strand, within Shewana3_2933 at 3521.081 kb on + strand, within Shewana3_2933 at 3521.085 kb on + strand, within Shewana3_2933 at 3521.138 kb on + strand, within Shewana3_2933 at 3521.435 kb on - strand, within Shewana3_2933 at 3521.449 kb on + strand, within Shewana3_2933 at 3521.885 kb on - strand at 3521.915 kb on - strand, within Shewana3_2934 at 3521.951 kb on - strand, within Shewana3_2934 at 3522.354 kb on + strand, within Shewana3_2934 at 3522.411 kb on + strand, within Shewana3_2934 at 3522.433 kb on + strand, within Shewana3_2934 at 3522.492 kb on + strand, within Shewana3_2934 at 3522.608 kb on + strand, within Shewana3_2934 at 3522.669 kb on + strand, within Shewana3_2934 at 3522.742 kb on - strand, within Shewana3_2934 at 3522.837 kb on + strand, within Shewana3_2934 at 3523.039 kb on + strand, within Shewana3_2934 at 3523.354 kb on - strand, within Shewana3_2934 at 3523.445 kb on + strand, within Shewana3_2934 at 3523.490 kb on + strand, within Shewana3_2934 at 3523.613 kb on + strand, within Shewana3_2934 at 3523.751 kb on - strand at 3523.859 kb on + strand at 3523.979 kb on + strand at 3524.124 kb on + strand at 3524.126 kb on + strand at 3524.132 kb on - strand at 3524.247 kb on - strand, within Shewana3_2935 at 3524.289 kb on - strand, within Shewana3_2935 at 3524.308 kb on + strand, within Shewana3_2935 at 3524.308 kb on + strand, within Shewana3_2935 at 3524.408 kb on + strand, within Shewana3_2935 at 3524.473 kb on + strand, within Shewana3_2935 at 3524.607 kb on - strand, within Shewana3_2935 at 3524.607 kb on - strand, within Shewana3_2935 at 3524.689 kb on + strand, within Shewana3_2935 at 3524.697 kb on - strand, within Shewana3_2935 at 3524.697 kb on - strand, within Shewana3_2935 at 3524.707 kb on - strand, within Shewana3_2935 at 3524.708 kb on - strand, within Shewana3_2935 at 3524.814 kb on - strand, within Shewana3_2935
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 3,520,791 + Shewana3_2933 0.60 -0.4 3,521,025 + Shewana3_2933 0.71 -0.3 3,521,081 + Shewana3_2933 0.73 +0.3 3,521,085 + Shewana3_2933 0.73 +0.8 3,521,138 + Shewana3_2933 0.76 +0.1 3,521,435 - Shewana3_2933 0.89 -0.5 3,521,449 + Shewana3_2933 0.90 -0.7 3,521,885 - +0.2 3,521,915 - Shewana3_2934 0.11 -0.3 3,521,951 - Shewana3_2934 0.12 +0.9 3,522,354 + Shewana3_2934 0.30 -0.2 3,522,411 + Shewana3_2934 0.33 -2.1 3,522,433 + Shewana3_2934 0.34 -1.1 3,522,492 + Shewana3_2934 0.36 +0.2 3,522,608 + Shewana3_2934 0.41 -0.9 3,522,669 + Shewana3_2934 0.44 +1.1 3,522,742 - Shewana3_2934 0.47 -1.1 3,522,837 + Shewana3_2934 0.52 -0.6 3,523,039 + Shewana3_2934 0.61 +0.6 3,523,354 - Shewana3_2934 0.75 +0.1 3,523,445 + Shewana3_2934 0.79 -0.2 3,523,490 + Shewana3_2934 0.81 -1.1 3,523,613 + Shewana3_2934 0.86 -1.1 3,523,751 - +0.9 3,523,859 + -0.2 3,523,979 + +0.3 3,524,124 + -0.2 3,524,126 + +0.4 3,524,132 - -0.8 3,524,247 - Shewana3_2935 0.13 +0.7 3,524,289 - Shewana3_2935 0.15 -0.0 3,524,308 + Shewana3_2935 0.16 +0.2 3,524,308 + Shewana3_2935 0.16 +0.2 3,524,408 + Shewana3_2935 0.20 +0.4 3,524,473 + Shewana3_2935 0.22 +0.8 3,524,607 - Shewana3_2935 0.28 -0.4 3,524,607 - Shewana3_2935 0.28 -1.1 3,524,689 + Shewana3_2935 0.31 -0.4 3,524,697 - Shewana3_2935 0.32 +0.1 3,524,697 - Shewana3_2935 0.32 -3.6 3,524,707 - Shewana3_2935 0.32 +0.0 3,524,708 - Shewana3_2935 0.32 +0.8 3,524,814 - Shewana3_2935 0.37 -0.0
Or see this region's nucleotide sequence