Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2934

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2933 and Shewana3_2934 overlap by 4 nucleotidesShewana3_2934 and Shewana3_2935 are separated by 17 nucleotides Shewana3_2933: Shewana3_2933 - glycogen debranching enzyme GlgX (RefSeq), at 3,519,425 to 3,521,683 _2933 Shewana3_2934: Shewana3_2934 - glycogen branching enzyme (RefSeq), at 3,521,680 to 3,523,917 _2934 Shewana3_2935: Shewana3_2935 - 4-alpha-glucanotransferase (RefSeq), at 3,523,935 to 3,526,340 _2935 Position (kb) 3521 3522 3523 3524Strain fitness (log2 ratio) -3 -2 -1 0 1at 3520.791 kb on + strand, within Shewana3_2933at 3521.025 kb on + strand, within Shewana3_2933at 3521.081 kb on + strand, within Shewana3_2933at 3521.085 kb on + strand, within Shewana3_2933at 3521.138 kb on + strand, within Shewana3_2933at 3521.435 kb on - strand, within Shewana3_2933at 3521.449 kb on + strand, within Shewana3_2933at 3521.885 kb on - strandat 3521.915 kb on - strand, within Shewana3_2934at 3521.951 kb on - strand, within Shewana3_2934at 3522.354 kb on + strand, within Shewana3_2934at 3522.411 kb on + strand, within Shewana3_2934at 3522.433 kb on + strand, within Shewana3_2934at 3522.492 kb on + strand, within Shewana3_2934at 3522.608 kb on + strand, within Shewana3_2934at 3522.669 kb on + strand, within Shewana3_2934at 3522.742 kb on - strand, within Shewana3_2934at 3522.837 kb on + strand, within Shewana3_2934at 3523.039 kb on + strand, within Shewana3_2934at 3523.354 kb on - strand, within Shewana3_2934at 3523.445 kb on + strand, within Shewana3_2934at 3523.490 kb on + strand, within Shewana3_2934at 3523.613 kb on + strand, within Shewana3_2934at 3523.751 kb on - strandat 3523.859 kb on + strandat 3523.979 kb on + strandat 3524.124 kb on + strandat 3524.126 kb on + strandat 3524.132 kb on - strandat 3524.247 kb on - strand, within Shewana3_2935at 3524.289 kb on - strand, within Shewana3_2935at 3524.308 kb on + strand, within Shewana3_2935at 3524.308 kb on + strand, within Shewana3_2935at 3524.408 kb on + strand, within Shewana3_2935at 3524.473 kb on + strand, within Shewana3_2935at 3524.607 kb on - strand, within Shewana3_2935at 3524.607 kb on - strand, within Shewana3_2935at 3524.689 kb on + strand, within Shewana3_2935at 3524.697 kb on - strand, within Shewana3_2935at 3524.697 kb on - strand, within Shewana3_2935at 3524.707 kb on - strand, within Shewana3_2935at 3524.708 kb on - strand, within Shewana3_2935at 3524.814 kb on - strand, within Shewana3_2935

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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3,520,791 + Shewana3_2933 0.60 -0.4
3,521,025 + Shewana3_2933 0.71 -0.3
3,521,081 + Shewana3_2933 0.73 +0.3
3,521,085 + Shewana3_2933 0.73 +0.8
3,521,138 + Shewana3_2933 0.76 +0.1
3,521,435 - Shewana3_2933 0.89 -0.5
3,521,449 + Shewana3_2933 0.90 -0.7
3,521,885 - +0.2
3,521,915 - Shewana3_2934 0.11 -0.3
3,521,951 - Shewana3_2934 0.12 +0.9
3,522,354 + Shewana3_2934 0.30 -0.2
3,522,411 + Shewana3_2934 0.33 -2.1
3,522,433 + Shewana3_2934 0.34 -1.1
3,522,492 + Shewana3_2934 0.36 +0.2
3,522,608 + Shewana3_2934 0.41 -0.9
3,522,669 + Shewana3_2934 0.44 +1.1
3,522,742 - Shewana3_2934 0.47 -1.1
3,522,837 + Shewana3_2934 0.52 -0.6
3,523,039 + Shewana3_2934 0.61 +0.6
3,523,354 - Shewana3_2934 0.75 +0.1
3,523,445 + Shewana3_2934 0.79 -0.2
3,523,490 + Shewana3_2934 0.81 -1.1
3,523,613 + Shewana3_2934 0.86 -1.1
3,523,751 - +0.9
3,523,859 + -0.2
3,523,979 + +0.3
3,524,124 + -0.2
3,524,126 + +0.4
3,524,132 - -0.8
3,524,247 - Shewana3_2935 0.13 +0.7
3,524,289 - Shewana3_2935 0.15 -0.0
3,524,308 + Shewana3_2935 0.16 +0.2
3,524,308 + Shewana3_2935 0.16 +0.2
3,524,408 + Shewana3_2935 0.20 +0.4
3,524,473 + Shewana3_2935 0.22 +0.8
3,524,607 - Shewana3_2935 0.28 -0.4
3,524,607 - Shewana3_2935 0.28 -1.1
3,524,689 + Shewana3_2935 0.31 -0.4
3,524,697 - Shewana3_2935 0.32 +0.1
3,524,697 - Shewana3_2935 0.32 -3.6
3,524,707 - Shewana3_2935 0.32 +0.0
3,524,708 - Shewana3_2935 0.32 +0.8
3,524,814 - Shewana3_2935 0.37 -0.0

Or see this region's nucleotide sequence