Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2571 and sbcB are separated by 175 nucleotides sbcB and Shewana3_2573 are separated by 212 nucleotides
Shewana3_2571: Shewana3_2571 - hypothetical protein (RefSeq), at 3,075,072 to 3,075,878
_2571
Shewana3_2572: sbcB - exonuclease I (RefSeq), at 3,076,054 to 3,077,466
sbcB
Shewana3_2573: Shewana3_2573 - Cytidine deaminase (EC 3.5.4.5) (from data) , at 3,077,679 to 3,078,569
_2573
Position (kb)
3076
3077
3078 Strain fitness (log2 ratio)
-2
-1
0
1 at 3075.139 kb on - strand at 3075.262 kb on + strand, within Shewana3_2571 at 3075.591 kb on + strand, within Shewana3_2571 at 3075.810 kb on + strand at 3075.811 kb on + strand at 3075.811 kb on + strand at 3075.819 kb on - strand at 3075.819 kb on - strand at 3075.828 kb on + strand at 3075.841 kb on - strand at 3075.893 kb on + strand at 3076.122 kb on + strand at 3076.130 kb on - strand at 3076.164 kb on - strand at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.356 kb on - strand, within sbcB at 3076.511 kb on - strand, within sbcB at 3076.574 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.690 kb on - strand, within sbcB at 3076.762 kb on + strand, within sbcB at 3076.762 kb on + strand, within sbcB at 3077.146 kb on - strand, within sbcB at 3077.701 kb on + strand at 3077.935 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.949 kb on - strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.974 kb on - strand, within Shewana3_2573 at 3078.033 kb on + strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.151 kb on + strand, within Shewana3_2573 at 3078.276 kb on + strand, within Shewana3_2573 at 3078.284 kb on - strand, within Shewana3_2573 at 3078.374 kb on + strand, within Shewana3_2573
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 3,075,139 - -1.0 3,075,262 + Shewana3_2571 0.24 -0.6 3,075,591 + Shewana3_2571 0.64 -0.6 3,075,810 + +1.3 3,075,811 + +0.2 3,075,811 + +0.2 3,075,819 - -0.9 3,075,819 - +1.0 3,075,828 + +0.6 3,075,841 - -0.5 3,075,893 + -0.4 3,076,122 + -0.2 3,076,130 - +0.1 3,076,164 - -2.0 3,076,348 + sbcB Shewana3_2572 0.21 -0.2 3,076,348 + sbcB Shewana3_2572 0.21 -0.2 3,076,348 + sbcB Shewana3_2572 0.21 -0.7 3,076,348 + sbcB Shewana3_2572 0.21 -0.2 3,076,356 - sbcB Shewana3_2572 0.21 -0.6 3,076,511 - sbcB Shewana3_2572 0.32 -0.7 3,076,574 + sbcB Shewana3_2572 0.37 -0.9 3,076,598 + sbcB Shewana3_2572 0.38 -0.1 3,076,598 + sbcB Shewana3_2572 0.38 -0.9 3,076,690 - sbcB Shewana3_2572 0.45 +0.6 3,076,762 + sbcB Shewana3_2572 0.50 -0.5 3,076,762 + sbcB Shewana3_2572 0.50 -1.5 3,077,146 - sbcB Shewana3_2572 0.77 -1.5 3,077,701 + -0.8 3,077,935 + Shewana3_2573 0.29 +0.0 3,077,941 + Shewana3_2573 0.29 -0.4 3,077,941 + Shewana3_2573 0.29 +0.3 3,077,949 - Shewana3_2573 0.30 -0.2 3,077,966 + Shewana3_2573 0.32 -1.5 3,077,966 + Shewana3_2573 0.32 -1.6 3,077,974 - Shewana3_2573 0.33 -0.4 3,078,033 + Shewana3_2573 0.40 -0.5 3,078,144 - Shewana3_2573 0.52 +0.7 3,078,144 - Shewana3_2573 0.52 -0.6 3,078,151 + Shewana3_2573 0.53 -0.7 3,078,276 + Shewana3_2573 0.67 -1.6 3,078,284 - Shewana3_2573 0.68 +0.3 3,078,374 + Shewana3_2573 0.78 +0.1
Or see this region's nucleotide sequence