Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2150

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2149 and Shewana3_2150 are separated by 12 nucleotidesShewana3_2150 and Shewana3_2151 are separated by 9 nucleotides Shewana3_2149: Shewana3_2149 - phosphogluconate dehydratase (RefSeq), at 2,573,951 to 2,575,777 _2149 Shewana3_2150: Shewana3_2150 - 6-phosphogluconolactonase (RefSeq), at 2,575,790 to 2,576,488 _2150 Shewana3_2151: Shewana3_2151 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,576,498 to 2,577,970 _2151 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2575.181 kb on - strand, within Shewana3_2149at 2575.445 kb on - strand, within Shewana3_2149at 2575.805 kb on - strandat 2576.006 kb on - strand, within Shewana3_2150at 2576.242 kb on - strand, within Shewana3_2150at 2576.373 kb on - strand, within Shewana3_2150

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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2,575,181 - Shewana3_2149 0.67 -1.1
2,575,445 - Shewana3_2149 0.82 -2.6
2,575,805 - -4.9
2,576,006 - Shewana3_2150 0.31 -2.6
2,576,242 - Shewana3_2150 0.65 -3.5
2,576,373 - Shewana3_2150 0.83 -1.6

Or see this region's nucleotide sequence