Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1166 and Shewana3_1167 are separated by 45 nucleotides Shewana3_1167 and Shewana3_1168 overlap by 1 nucleotides Shewana3_1168 and Shewana3_1169 overlap by 4 nucleotides
Shewana3_1166: Shewana3_1166 - deoxyribodipyrimidine photo-lyase type I (RefSeq), at 1,376,924 to 1,378,405
_1166
Shewana3_1167: Shewana3_1167 - transcriptional regulator-related protein (RefSeq), at 1,378,451 to 1,378,897
_1167
Shewana3_1168: Shewana3_1168 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,378,897 to 1,379,697
_1168
Shewana3_1169: Shewana3_1169 - amine oxidase (RefSeq), at 1,379,694 to 1,380,944
_1169
Position (kb)
1378
1379
1380 Strain fitness (log2 ratio)
-2
-1
0
1 at 1378.056 kb on - strand, within Shewana3_1166 at 1378.065 kb on + strand, within Shewana3_1166 at 1378.079 kb on - strand, within Shewana3_1166 at 1378.122 kb on + strand, within Shewana3_1166 at 1378.319 kb on + strand at 1378.323 kb on - strand at 1378.325 kb on + strand at 1378.333 kb on - strand at 1378.467 kb on + strand at 1378.549 kb on + strand, within Shewana3_1167 at 1378.873 kb on + strand at 1378.882 kb on - strand at 1378.906 kb on + strand at 1378.920 kb on + strand at 1378.928 kb on - strand at 1378.930 kb on + strand at 1379.027 kb on - strand, within Shewana3_1168 at 1379.058 kb on + strand, within Shewana3_1168 at 1379.445 kb on - strand, within Shewana3_1168 at 1379.675 kb on + strand at 1379.743 kb on + strand at 1379.977 kb on - strand, within Shewana3_1169 at 1380.309 kb on + strand, within Shewana3_1169 at 1380.311 kb on + strand, within Shewana3_1169 at 1380.331 kb on + strand, within Shewana3_1169 at 1380.339 kb on - strand, within Shewana3_1169 at 1380.584 kb on + strand, within Shewana3_1169 at 1380.584 kb on + strand, within Shewana3_1169 at 1380.604 kb on - strand, within Shewana3_1169
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 1,378,056 - Shewana3_1166 0.76 -0.8 1,378,065 + Shewana3_1166 0.77 +0.6 1,378,079 - Shewana3_1166 0.78 -0.5 1,378,122 + Shewana3_1166 0.81 -2.6 1,378,319 + -0.1 1,378,323 - +1.1 1,378,325 + +0.4 1,378,333 - +0.4 1,378,467 + -0.3 1,378,549 + Shewana3_1167 0.22 +1.3 1,378,873 + +1.1 1,378,882 - -0.6 1,378,906 + +1.0 1,378,920 + -0.0 1,378,928 - +0.3 1,378,930 + -0.3 1,379,027 - Shewana3_1168 0.16 +0.2 1,379,058 + Shewana3_1168 0.20 -0.0 1,379,445 - Shewana3_1168 0.68 +0.0 1,379,675 + -0.7 1,379,743 + -0.1 1,379,977 - Shewana3_1169 0.23 +0.3 1,380,309 + Shewana3_1169 0.49 +0.1 1,380,311 + Shewana3_1169 0.49 -1.7 1,380,331 + Shewana3_1169 0.51 +0.5 1,380,339 - Shewana3_1169 0.52 +0.8 1,380,584 + Shewana3_1169 0.71 -0.6 1,380,584 + Shewana3_1169 0.71 +0.1 1,380,604 - Shewana3_1169 0.73 +0.5
Or see this region's nucleotide sequence