Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pntA and Shewana3_0855 are separated by 417 nucleotides Shewana3_0855 and Shewana3_0856 are separated by 74 nucleotides
Shewana3_0854: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 991,421 to 992,947
pntA
Shewana3_0855: Shewana3_0855 - sulfite reductase (NADPH) alpha subunit (RefSeq), at 993,365 to 995,179
_0855
Shewana3_0856: Shewana3_0856 - sulfite reductase subunit beta (RefSeq), at 995,254 to 996,951
_0856
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 992.391 kb on - strand, within pntA at 992.391 kb on - strand, within pntA at 992.567 kb on - strand, within pntA at 992.631 kb on + strand, within pntA at 992.674 kb on + strand, within pntA at 992.692 kb on - strand, within pntA at 992.997 kb on + strand at 993.013 kb on + strand at 993.021 kb on - strand at 993.021 kb on - strand at 993.132 kb on - strand at 993.349 kb on + strand at 993.349 kb on + strand at 993.357 kb on - strand at 993.477 kb on - strand at 993.528 kb on - strand at 993.561 kb on - strand, within Shewana3_0855 at 993.642 kb on - strand, within Shewana3_0855 at 993.655 kb on - strand, within Shewana3_0855 at 993.662 kb on + strand, within Shewana3_0855 at 993.860 kb on + strand, within Shewana3_0855 at 993.921 kb on + strand, within Shewana3_0855 at 993.965 kb on + strand, within Shewana3_0855 at 994.098 kb on - strand, within Shewana3_0855 at 994.194 kb on + strand, within Shewana3_0855 at 994.247 kb on + strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.355 kb on + strand, within Shewana3_0855 at 994.391 kb on - strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.482 kb on - strand, within Shewana3_0855 at 994.533 kb on - strand, within Shewana3_0855 at 994.564 kb on + strand, within Shewana3_0855 at 994.695 kb on - strand, within Shewana3_0855 at 994.870 kb on + strand, within Shewana3_0855 at 994.969 kb on - strand, within Shewana3_0855 at 994.985 kb on + strand, within Shewana3_0855 at 994.986 kb on + strand, within Shewana3_0855 at 995.055 kb on - strand at 995.087 kb on + strand at 995.148 kb on + strand at 995.286 kb on + strand at 995.462 kb on + strand, within Shewana3_0856 at 995.496 kb on + strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.583 kb on - strand, within Shewana3_0856 at 995.722 kb on - strand, within Shewana3_0856 at 995.788 kb on - strand, within Shewana3_0856 at 995.825 kb on - strand, within Shewana3_0856 at 996.024 kb on + strand, within Shewana3_0856 at 996.146 kb on - strand, within Shewana3_0856
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 992,391 - pntA Shewana3_0854 0.64 -0.6 992,391 - pntA Shewana3_0854 0.64 -0.0 992,567 - pntA Shewana3_0854 0.75 -0.0 992,631 + pntA Shewana3_0854 0.79 +1.1 992,674 + pntA Shewana3_0854 0.82 +0.0 992,692 - pntA Shewana3_0854 0.83 +0.1 992,997 + +0.4 993,013 + +0.1 993,021 - -0.1 993,021 - -0.1 993,132 - +0.1 993,349 + -5.3 993,349 + -3.8 993,357 - -3.9 993,477 - -2.2 993,528 - -2.2 993,561 - Shewana3_0855 0.11 -3.3 993,642 - Shewana3_0855 0.15 -3.2 993,655 - Shewana3_0855 0.16 -5.6 993,662 + Shewana3_0855 0.16 -2.5 993,860 + Shewana3_0855 0.27 -1.4 993,921 + Shewana3_0855 0.31 -4.2 993,965 + Shewana3_0855 0.33 -4.4 994,098 - Shewana3_0855 0.40 -6.5 994,194 + Shewana3_0855 0.46 -3.0 994,247 + Shewana3_0855 0.49 -5.9 994,255 - Shewana3_0855 0.49 -3.8 994,255 - Shewana3_0855 0.49 -3.1 994,255 - Shewana3_0855 0.49 -3.9 994,347 - Shewana3_0855 0.54 -4.0 994,347 - Shewana3_0855 0.54 -3.9 994,355 + Shewana3_0855 0.55 -3.5 994,391 - Shewana3_0855 0.57 -3.0 994,474 + Shewana3_0855 0.61 -3.6 994,474 + Shewana3_0855 0.61 -5.4 994,482 - Shewana3_0855 0.62 -4.1 994,533 - Shewana3_0855 0.64 -2.6 994,564 + Shewana3_0855 0.66 -2.1 994,695 - Shewana3_0855 0.73 -4.0 994,870 + Shewana3_0855 0.83 -6.1 994,969 - Shewana3_0855 0.88 -3.6 994,985 + Shewana3_0855 0.89 -4.9 994,986 + Shewana3_0855 0.89 -5.3 995,055 - -4.4 995,087 + +0.1 995,148 + -4.2 995,286 + -3.5 995,462 + Shewana3_0856 0.12 -4.1 995,496 + Shewana3_0856 0.14 -5.0 995,504 - Shewana3_0856 0.15 -4.1 995,504 - Shewana3_0856 0.15 -2.3 995,583 - Shewana3_0856 0.19 -4.5 995,722 - Shewana3_0856 0.28 -3.8 995,788 - Shewana3_0856 0.31 -4.1 995,825 - Shewana3_0856 0.34 -2.8 996,024 + Shewana3_0856 0.45 -3.6 996,146 - Shewana3_0856 0.53 -2.2
Or see this region's nucleotide sequence