Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0822

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0821 and Shewana3_0822 are separated by 25 nucleotidesShewana3_0822 and Shewana3_0823 are separated by 231 nucleotides Shewana3_0821: Shewana3_0821 - phosphate transporter (RefSeq), at 951,807 to 953,096 _0821 Shewana3_0822: Shewana3_0822 - hypothetical protein (RefSeq), at 953,122 to 953,802 _0822 Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545 _0823 Position (kb) 953 954Strain fitness (log2 ratio) -2 -1 0 1at 953.191 kb on - strand, within Shewana3_0822at 953.358 kb on - strand, within Shewana3_0822at 953.857 kb on - strandat 954.170 kb on + strandat 954.197 kb on + strand, within Shewana3_0823at 954.205 kb on - strand, within Shewana3_0823at 954.205 kb on - strand, within Shewana3_0823at 954.244 kb on - strand, within Shewana3_0823at 954.379 kb on + strand, within Shewana3_0823at 954.431 kb on - strand, within Shewana3_0823at 954.433 kb on + strand, within Shewana3_0823at 954.492 kb on + strand, within Shewana3_0823at 954.603 kb on - strand, within Shewana3_0823at 954.608 kb on - strand, within Shewana3_0823at 954.653 kb on + strand, within Shewana3_0823at 954.653 kb on + strand, within Shewana3_0823at 954.661 kb on - strand, within Shewana3_0823at 954.701 kb on + strand, within Shewana3_0823at 954.739 kb on + strand, within Shewana3_0823

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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953,191 - Shewana3_0822 0.10 -2.7
953,358 - Shewana3_0822 0.35 -2.4
953,857 - -0.2
954,170 + -0.5
954,197 + Shewana3_0823 0.11 +0.1
954,205 - Shewana3_0823 0.11 -0.6
954,205 - Shewana3_0823 0.11 -1.3
954,244 - Shewana3_0823 0.14 -0.8
954,379 + Shewana3_0823 0.23 -1.6
954,431 - Shewana3_0823 0.26 -1.0
954,433 + Shewana3_0823 0.26 -1.6
954,492 + Shewana3_0823 0.30 -0.8
954,603 - Shewana3_0823 0.38 -1.5
954,608 - Shewana3_0823 0.38 -0.8
954,653 + Shewana3_0823 0.41 -1.7
954,653 + Shewana3_0823 0.41 -2.1
954,661 - Shewana3_0823 0.41 -0.3
954,701 + Shewana3_0823 0.44 +0.1
954,739 + Shewana3_0823 0.47 +0.2

Or see this region's nucleotide sequence