Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0641 and Shewana3_0642 are separated by 390 nucleotides Shewana3_0642 and Shewana3_0643 are separated by 62 nucleotides Shewana3_0643 and Shewana3_0644 are separated by 407 nucleotides
Shewana3_0641: Shewana3_0641 - hypothetical protein (RefSeq), at 757,546 to 758,418
_0641
Shewana3_0642: Shewana3_0642 - sodium:dicarboxylate symporter (RefSeq), at 758,809 to 760,059
_0642
Shewana3_0643: Shewana3_0643 - hypothetical protein (RefSeq), at 760,122 to 760,592
_0643
Shewana3_0644: Shewana3_0644 - hypothetical protein (RefSeq), at 761,000 to 761,488
_0644
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 758.183 kb on - strand, within Shewana3_0641 at 758.189 kb on + strand, within Shewana3_0641 at 758.244 kb on + strand, within Shewana3_0641 at 758.252 kb on - strand, within Shewana3_0641 at 758.724 kb on - strand at 759.085 kb on - strand, within Shewana3_0642 at 759.140 kb on - strand, within Shewana3_0642 at 759.194 kb on + strand, within Shewana3_0642 at 759.228 kb on - strand, within Shewana3_0642 at 759.334 kb on + strand, within Shewana3_0642 at 759.383 kb on - strand, within Shewana3_0642 at 759.456 kb on + strand, within Shewana3_0642 at 759.606 kb on + strand, within Shewana3_0642 at 759.858 kb on - strand, within Shewana3_0642 at 759.942 kb on - strand at 759.958 kb on + strand at 759.961 kb on - strand at 759.966 kb on - strand at 759.994 kb on + strand at 760.107 kb on + strand at 760.182 kb on + strand, within Shewana3_0643 at 760.190 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.252 kb on + strand, within Shewana3_0643 at 760.281 kb on - strand, within Shewana3_0643 at 760.451 kb on + strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.592 kb on + strand at 760.761 kb on + strand at 760.968 kb on - strand at 760.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 758,183 - Shewana3_0641 0.73 -0.4 758,189 + Shewana3_0641 0.74 +0.2 758,244 + Shewana3_0641 0.80 -1.6 758,252 - Shewana3_0641 0.81 +0.8 758,724 - +1.3 759,085 - Shewana3_0642 0.22 +1.0 759,140 - Shewana3_0642 0.26 +1.2 759,194 + Shewana3_0642 0.31 -0.0 759,228 - Shewana3_0642 0.33 +1.7 759,334 + Shewana3_0642 0.42 +0.2 759,383 - Shewana3_0642 0.46 +0.8 759,456 + Shewana3_0642 0.52 -0.3 759,606 + Shewana3_0642 0.64 -0.4 759,858 - Shewana3_0642 0.84 -0.7 759,942 - +0.1 759,958 + +0.5 759,961 - -0.2 759,966 - +0.7 759,994 + -0.9 760,107 + +1.1 760,182 + Shewana3_0643 0.13 -0.0 760,190 - Shewana3_0643 0.14 +0.9 760,202 - Shewana3_0643 0.17 +0.0 760,202 - Shewana3_0643 0.17 -0.2 760,252 + Shewana3_0643 0.28 -0.6 760,281 - Shewana3_0643 0.34 +0.6 760,451 + Shewana3_0643 0.70 +0.3 760,517 - Shewana3_0643 0.84 -0.3 760,517 - Shewana3_0643 0.84 -0.5 760,592 + -0.2 760,761 + -0.9 760,968 - +0.2 760,976 - -3.5
Or see this region's nucleotide sequence