Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0575 and Shewana3_0576 are separated by 220 nucleotides Shewana3_0576 and Shewana3_0577 are separated by 82 nucleotides
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Shewana3_0577: Shewana3_0577 - hypothetical protein (RefSeq), at 675,647 to 678,049
_0577
Position (kb) 671
672
673
674
675
676 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 670.951 kb on + strand, within Shewana3_0575 at 671.507 kb on - strand at 671.574 kb on - strand at 671.970 kb on - strand at 672.073 kb on + strand at 672.108 kb on + strand at 672.229 kb on + strand, within Shewana3_0576 at 672.273 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.399 kb on + strand, within Shewana3_0576 at 672.501 kb on + strand, within Shewana3_0576 at 672.520 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.778 kb on - strand, within Shewana3_0576 at 672.783 kb on - strand, within Shewana3_0576 at 672.917 kb on + strand, within Shewana3_0576 at 672.959 kb on - strand, within Shewana3_0576 at 673.095 kb on - strand, within Shewana3_0576 at 673.490 kb on + strand, within Shewana3_0576 at 673.977 kb on + strand, within Shewana3_0576 at 674.258 kb on + strand, within Shewana3_0576 at 674.698 kb on - strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.717 kb on - strand, within Shewana3_0576 at 674.767 kb on - strand, within Shewana3_0576 at 675.195 kb on - strand at 675.317 kb on + strand at 675.393 kb on + strand at 675.506 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.606 kb on - strand at 675.653 kb on + strand at 675.742 kb on + strand at 675.802 kb on - strand at 675.859 kb on + strand at 675.907 kb on - strand, within Shewana3_0577 at 675.932 kb on + strand, within Shewana3_0577 at 676.010 kb on + strand, within Shewana3_0577 at 676.307 kb on + strand, within Shewana3_0577 at 676.473 kb on - strand, within Shewana3_0577 at 676.478 kb on - strand, within Shewana3_0577 at 676.519 kb on + strand, within Shewana3_0577 at 676.544 kb on + strand, within Shewana3_0577
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 670,951 + Shewana3_0575 0.51 +0.3 671,507 - -0.5 671,574 - -0.9 671,970 - +3.5 672,073 + +3.0 672,108 + +3.2 672,229 + Shewana3_0576 0.10 +3.1 672,273 + Shewana3_0576 0.11 +3.8 672,312 + Shewana3_0576 0.12 +3.0 672,312 + Shewana3_0576 0.12 +4.6 672,399 + Shewana3_0576 0.15 +3.9 672,501 + Shewana3_0576 0.17 +4.0 672,520 + Shewana3_0576 0.18 +3.3 672,539 + Shewana3_0576 0.18 +2.8 672,539 + Shewana3_0576 0.18 +2.8 672,778 - Shewana3_0576 0.25 +3.9 672,783 - Shewana3_0576 0.25 +3.8 672,917 + Shewana3_0576 0.29 +3.5 672,959 - Shewana3_0576 0.30 +2.5 673,095 - Shewana3_0576 0.33 +3.5 673,490 + Shewana3_0576 0.44 +2.2 673,977 + Shewana3_0576 0.57 +4.1 674,258 + Shewana3_0576 0.65 +3.1 674,698 - Shewana3_0576 0.77 +4.0 674,709 + Shewana3_0576 0.77 +4.3 674,709 + Shewana3_0576 0.77 +2.9 674,717 - Shewana3_0576 0.77 +3.2 674,767 - Shewana3_0576 0.78 +0.1 675,195 - +3.2 675,317 + +3.2 675,393 + +2.7 675,506 + +3.9 675,544 - -1.1 675,544 - +1.1 675,544 - -0.2 675,606 - -0.4 675,653 + -0.7 675,742 + +0.5 675,802 - +0.1 675,859 + -0.2 675,907 - Shewana3_0577 0.11 +0.9 675,932 + Shewana3_0577 0.12 -0.2 676,010 + Shewana3_0577 0.15 +0.0 676,307 + Shewana3_0577 0.27 -0.4 676,473 - Shewana3_0577 0.34 -0.5 676,478 - Shewana3_0577 0.35 +0.2 676,519 + Shewana3_0577 0.36 -0.0 676,544 + Shewana3_0577 0.37 -0.7
Or see this region's nucleotide sequence