Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0017

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyS and glyQ are separated by 9 nucleotidesglyQ and Shewana3_0018 are separated by 118 nucleotidesShewana3_0018 and Shewana3_0019 are separated by 85 nucleotides Shewana3_0016: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 18,813 to 20,879 glyS Shewana3_0017: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 20,889 to 21,794 glyQ Shewana3_0018: Shewana3_0018 - DNA-3-methyladenine glycosylase I (RefSeq), at 21,913 to 22,488 _0018 Shewana3_0019: Shewana3_0019 - amidohydrolase (RefSeq), at 22,574 to 25,762 _0019 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1at 21.895 kb on + strandat 21.895 kb on + strandat 21.976 kb on + strand, within Shewana3_0018at 21.976 kb on + strand, within Shewana3_0018at 22.020 kb on + strand, within Shewana3_0018at 22.025 kb on + strand, within Shewana3_0018at 22.226 kb on - strand, within Shewana3_0018at 22.271 kb on + strand, within Shewana3_0018at 22.313 kb on + strand, within Shewana3_0018at 22.340 kb on + strand, within Shewana3_0018at 22.353 kb on + strand, within Shewana3_0018at 22.353 kb on + strand, within Shewana3_0018at 22.541 kb on + strandat 22.674 kb on - strandat 22.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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21,895 + +0.1
21,895 + -0.1
21,976 + Shewana3_0018 0.11 -0.6
21,976 + Shewana3_0018 0.11 +0.2
22,020 + Shewana3_0018 0.19 -0.2
22,025 + Shewana3_0018 0.19 -0.4
22,226 - Shewana3_0018 0.54 -0.7
22,271 + Shewana3_0018 0.62 -1.2
22,313 + Shewana3_0018 0.69 -0.6
22,340 + Shewana3_0018 0.74 +0.0
22,353 + Shewana3_0018 0.76 +0.2
22,353 + Shewana3_0018 0.76 -0.7
22,541 + +0.1
22,674 - -0.7
22,684 - -0.5

Or see this region's nucleotide sequence