Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4666

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4665 and BT4666 are separated by 4 nucleotidesBT4666 and BT4667 are separated by 559 nucleotides BT4665: BT4665 - K+ uptake protein (NCBI ptt file), at 6,113,157 to 6,114,986 BT4665 BT4666: BT4666 - putative K+ uptake system protein (NCBI ptt file), at 6,114,991 to 6,115,677 BT4666 BT4667: BT4667 - beta-galactosidase (NCBI ptt file), at 6,116,237 to 6,118,684 BT4667 Position (kb) 6114 6115 6116Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6114.036 kb on - strand, within BT4665at 6114.456 kb on - strand, within BT4665at 6114.746 kb on - strand, within BT4665at 6114.812 kb on + strandat 6114.813 kb on - strandat 6114.813 kb on - strandat 6114.909 kb on - strandat 6114.997 kb on + strandat 6115.185 kb on - strand, within BT4666at 6115.427 kb on - strand, within BT4666at 6115.461 kb on - strand, within BT4666at 6115.461 kb on - strand, within BT4666at 6115.461 kb on - strand, within BT4666at 6115.639 kb on - strandat 6115.672 kb on - strandat 6115.694 kb on - strandat 6115.732 kb on - strandat 6115.801 kb on + strandat 6115.813 kb on + strandat 6115.927 kb on - strandat 6115.984 kb on + strandat 6116.054 kb on - strandat 6116.072 kb on + strandat 6116.082 kb on + strandat 6116.113 kb on - strandat 6116.173 kb on + strandat 6116.218 kb on - strandat 6116.229 kb on + strandat 6116.229 kb on + strandat 6116.229 kb on + strandat 6116.325 kb on - strandat 6116.330 kb on - strandat 6116.585 kb on + strand, within BT4667at 6116.631 kb on - strand, within BT4667at 6116.652 kb on + strand, within BT4667at 6116.653 kb on - strand, within BT4667at 6116.654 kb on + strand, within BT4667

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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6,114,036 - BT4665 0.48 -2.5
6,114,456 - BT4665 0.71 +0.3
6,114,746 - BT4665 0.87 -1.4
6,114,812 + +2.6
6,114,813 - -2.1
6,114,813 - -1.1
6,114,909 - -1.2
6,114,997 + -1.6
6,115,185 - BT4666 0.28 -1.2
6,115,427 - BT4666 0.63 -2.2
6,115,461 - BT4666 0.68 -0.7
6,115,461 - BT4666 0.68 -0.7
6,115,461 - BT4666 0.68 -3.0
6,115,639 - +0.6
6,115,672 - -1.2
6,115,694 - -0.4
6,115,732 - -0.0
6,115,801 + -0.6
6,115,813 + +0.5
6,115,927 - -0.7
6,115,984 + -1.0
6,116,054 - -2.4
6,116,072 + -3.1
6,116,082 + -1.4
6,116,113 - -0.8
6,116,173 + -1.7
6,116,218 - -0.6
6,116,229 + +0.6
6,116,229 + -2.1
6,116,229 + -2.2
6,116,325 - -1.0
6,116,330 - -0.4
6,116,585 + BT4667 0.14 +2.2
6,116,631 - BT4667 0.16 -0.7
6,116,652 + BT4667 0.17 -1.2
6,116,653 - BT4667 0.17 -0.2
6,116,654 + BT4667 0.17 +3.2

Or see this region's nucleotide sequence