Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2654

Experiment: L-aspartic (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-aspartic (N)
3,304,453	-		BT2653	0.37	-2.1
3,304,471	+		BT2653	0.43	-1.9
3,304,472	-		BT2653	0.43	-1.1
3,304,508	+		BT2653	0.55	-1.8
3,304,556	-		BT2653	0.72	-1.8
3,304,577	+		BT2653	0.79	-1.7
3,304,582	+		BT2653	0.81	-1.0
3,304,583	-		BT2653	0.81	-3.2
3,304,583	-		BT2653	0.81	-1.4
3,304,583	-		BT2653	0.81	-0.5
3,304,596	+		BT2653	0.85	+0.8
3,304,596	+		BT2653	0.85	-2.0
3,304,597	-		BT2653	0.86	-0.1
3,304,637	-				-0.7
3,304,651	+				-0.5
3,304,652	-				+2.1
3,304,696	+				-1.8
3,304,697	-				-1.3
3,304,698	+				-0.8
3,304,698	+				-3.2
3,304,698	+				-1.5
3,304,699	-				-0.9
3,304,699	-				-0.1
3,304,700	+				-2.1
3,304,700	+				+0.7
3,304,701	-				-1.4
3,304,720	-				+0.3
3,304,732	+				-2.4
3,304,753	-				-1.6
3,304,832	+				-1.1
3,304,972	+				-0.9
3,304,975	+				-1.5
3,304,975	+				-3.1
3,304,975	+				-0.8
3,305,026	+				-2.0
3,305,027	-				-0.3
3,305,053	+				-0.5
3,305,057	+				-0.1
3,305,057	+				-0.7
3,305,058	-				-1.8
3,305,086	-				-0.2
3,305,105	+				-2.5
3,305,115	+				-1.3
3,305,150	+				+0.3
3,305,177	+				-2.0
3,305,178	-				-0.1
3,305,186	+				-2.0
3,305,187	-				-0.8
3,305,205	+				-0.8
3,305,205	+				-3.5
3,305,287	+				-2.6
3,305,287	+				-3.1
3,305,288	-				-3.1
3,305,297	+				-1.7
3,305,304	-				-2.5
3,305,308	+				-1.9
3,305,309	-				-1.7
3,305,325	+				+0.5
3,305,326	-				-1.4
3,305,330	-				-1.6
3,305,385	+				-1.4
3,305,386	-				-2.6
3,305,441	-				-0.7
3,305,464	+		BT2654	0.11	-2.2
3,305,506	-		BT2654	0.15	-1.8
3,305,558	-		BT2654	0.19	-0.6
3,305,619	+		BT2654	0.24	+0.1
3,305,619	+		BT2654	0.24	-1.1
3,305,629	-		BT2654	0.25	-2.5
3,305,629	-		BT2654	0.25	-0.8
3,305,635	+		BT2654	0.25	-2.0
3,305,686	+		BT2654	0.29	-0.5
3,305,687	-		BT2654	0.29	-1.5
3,305,688	+		BT2654	0.30	-1.6
3,305,741	+		BT2654	0.34	-1.3
3,305,741	+		BT2654	0.34	-0.5
3,305,771	-		BT2654	0.36	+0.5
3,305,797	-		BT2654	0.39	+0.4
3,305,797	-		BT2654	0.39	-2.7
3,305,826	+		BT2654	0.41	-1.0
3,305,867	+		BT2654	0.44	-2.6
3,305,868	-		BT2654	0.44	-1.8
3,305,868	-		BT2654	0.44	-0.4
3,305,870	+		BT2654	0.45	-1.1
3,305,870	+		BT2654	0.45	+0.1
3,305,870	+		BT2654	0.45	-2.1
3,305,871	-		BT2654	0.45	+0.1
3,305,872	+		BT2654	0.45	-0.1
3,305,873	-		BT2654	0.45	-1.1
3,305,873	-		BT2654	0.45	-0.7
3,305,946	-		BT2654	0.51	-1.6
3,305,946	-		BT2654	0.51	-1.5
3,305,952	-		BT2654	0.51	-1.1
3,305,952	-		BT2654	0.51	-0.8
3,305,986	-		BT2654	0.54	+1.5
3,305,986	-		BT2654	0.54	-2.4
3,305,986	-		BT2654	0.54	-0.3
3,305,986	-		BT2654	0.54	-0.3
3,306,009	+		BT2654	0.56	-0.7
3,306,040	+		BT2654	0.59	-3.2
3,306,077	+		BT2654	0.62	-1.1
3,306,110	+		BT2654	0.64	-0.6
3,306,160	+		BT2654	0.68	-1.3
3,306,185	-		BT2654	0.71	-1.7
3,306,223	+		BT2654	0.74	-1.8
3,306,224	-		BT2654	0.74	-1.1
3,306,229	+		BT2654	0.74	-0.8
3,306,230	-		BT2654	0.74	-2.1
3,306,231	+		BT2654	0.74	-1.3
3,306,232	-		BT2654	0.74	-0.7
3,306,242	+		BT2654	0.75	-0.7
3,306,249	+		BT2654	0.76	+1.5
3,306,250	-		BT2654	0.76	+0.5
3,306,250	-		BT2654	0.76	-1.6
3,306,253	+		BT2654	0.76	-2.4
3,306,271	+		BT2654	0.78	+1.0
3,306,317	-		BT2654	0.81	+0.3
3,306,330	+		BT2654	0.83	-0.5
3,306,333	+		BT2654	0.83	-1.5
3,306,334	-		BT2654	0.83	-0.8
3,306,334	-		BT2654	0.83	-2.6
3,306,364	-		BT2654	0.85	+0.2
3,306,364	-		BT2654	0.85	+0.1
3,306,371	+		BT2654	0.86	-4.9
3,306,371	+		BT2654	0.86	-1.0
3,306,372	-		BT2654	0.86	-0.2
3,306,372	-		BT2654	0.86	-2.5
3,306,372	-		BT2654	0.86	+0.5
3,306,421	+				-0.4
3,306,421	+				-1.5
3,306,433	+				-0.8
3,306,473	-				-1.3
3,306,476	+				+0.4
3,306,480	+				+0.5
3,306,520	+				+0.5
3,306,520	+				-0.5
3,306,521	-				-1.7
3,306,521	-				-0.9
3,306,521	-				-1.1
3,306,543	-				-0.1
3,306,586	+				-1.3
3,306,600	+				-0.0
3,306,600	+				-0.3
3,306,601	-				-0.5
3,306,612	-				-1.2
3,306,612	-				-2.4
3,306,616	-				-1.1
3,306,616	-				-2.2
3,306,616	-				-1.7
3,306,621	+				-2.7
3,306,622	-				-0.4
3,306,644	-				-1.3
3,306,644	-				-3.5
3,306,699	+				-0.2
3,306,742	-				-1.2
3,306,745	+				-1.9
3,306,745	+				-2.4
3,306,746	-				-2.1
3,306,746	-				-1.3
3,306,760	+				-2.3
3,306,764	-				-1.3
3,306,793	-				-0.8
3,306,794	+				-2.3
3,306,794	+				-0.1
3,306,794	+				-3.4
3,306,794	+				-1.5
3,306,795	-				-1.7
3,306,810	+				+1.0
3,306,810	+				-0.7
3,306,815	-				-2.3
3,306,815	-				-2.0
3,306,815	-				-0.3
3,306,832	-				-3.5
3,306,880	+				-1.9
3,306,917	-				-1.8
3,306,917	-				-2.1
3,306,935	+				-2.0
3,306,936	-				+0.1
3,306,936	-				+0.2
3,306,936	-				-2.9
3,306,938	-				+0.6
3,306,940	-				+2.1
3,306,940	-				-2.4
3,306,953	-		BT2655	0.10	+0.2
3,306,956	+		BT2655	0.10	-1.1
3,306,957	-		BT2655	0.10	-0.1
3,307,055	-		BT2655	0.13	-0.8
3,307,059	-		BT2655	0.14	-0.3
3,307,059	-		BT2655	0.14	-1.1
3,307,059	-		BT2655	0.14	-1.5
3,307,059	-		BT2655	0.14	-2.6
3,307,060	+		BT2655	0.14	-1.1
3,307,061	-		BT2655	0.14	-1.5
3,307,061	-		BT2655	0.14	-2.1
3,307,061	-		BT2655	0.14	-2.5
3,307,075	+		BT2655	0.14	+0.9
3,307,076	-		BT2655	0.14	-0.8
3,307,076	-		BT2655	0.14	+0.1
3,307,080	+		BT2655	0.14	+0.3
3,307,093	+		BT2655	0.15	-1.1
3,307,160	+		BT2655	0.17	-2.1
3,307,178	+		BT2655	0.17	-0.5
3,307,179	-		BT2655	0.17	+0.3
3,307,179	-		BT2655	0.17	-1.3
3,307,179	-		BT2655	0.17	+1.8
3,307,181	-		BT2655	0.17	-1.8
3,307,199	+		BT2655	0.18	-1.5
3,307,200	-		BT2655	0.18	-0.5
3,307,205	-		BT2655	0.18	-2.2
3,307,207	-		BT2655	0.18	-1.7
3,307,215	+		BT2655	0.18	-1.3
3,307,249	+		BT2655	0.19	-3.0
3,307,270	+		BT2655	0.20	-1.3
3,307,270	+		BT2655	0.20	-1.7
3,307,271	-		BT2655	0.20	-0.1
3,307,304	-		BT2655	0.21	+0.5
3,307,306	+		BT2655	0.21	+1.3
3,307,481	-		BT2655	0.27	-1.1
3,307,493	-		BT2655	0.27	-3.7