Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37435

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,874,015	+		RR42_RS37425	0.55	-0.2
3,874,015	+		RR42_RS37425	0.55	+0.1
3,874,024	+		RR42_RS37425	0.58	-0.1
3,874,024	+		RR42_RS37425	0.58	+0.8
3,874,024	+		RR42_RS37425	0.58	-0.2
3,874,024	+		RR42_RS37425	0.58	-0.0
3,874,025	-		RR42_RS37425	0.58	-0.5
3,874,025	-		RR42_RS37425	0.58	-0.4
3,874,280	+				+0.1
3,874,280	+				-0.1
3,874,281	-				-0.3
3,874,281	-				-1.0
3,874,380	+		RR42_RS37430	0.19	+0.5
3,874,419	+		RR42_RS37430	0.24	-0.8
3,874,420	-		RR42_RS37430	0.24	-0.6
3,874,534	-		RR42_RS37430	0.41	-0.3
3,874,534	-		RR42_RS37430	0.41	+0.1
3,874,584	+		RR42_RS37430	0.48	-1.4
3,874,677	+		RR42_RS37430	0.61	-0.6
3,874,705	-		RR42_RS37430	0.65	-1.0
3,874,782	+		RR42_RS37430	0.76	+0.5
3,874,836	+		RR42_RS37430	0.83	+0.4
3,874,836	+		RR42_RS37430	0.83	+0.7
3,874,837	-		RR42_RS37430	0.84	-0.3
3,874,997	+				+0.3
3,874,998	-				-0.2
3,874,998	-				-0.0
3,874,998	-				-0.6
3,875,059	-				+0.9
3,875,061	-				-0.5
3,875,316	-		RR42_RS37435	0.18	+1.7
3,875,510	+		RR42_RS37435	0.27	+1.2
3,875,960	+		RR42_RS37435	0.49	-1.2
3,876,073	+		RR42_RS37435	0.55	+0.5
3,876,158	+		RR42_RS37435	0.59	+0.2
3,876,303	-		RR42_RS37435	0.66	+0.9
3,876,408	-		RR42_RS37435	0.71	+1.3
3,876,428	-		RR42_RS37435	0.72	+0.0
3,876,885	-				-1.6
3,876,906	+				-0.1
3,876,906	+				+0.3
3,876,907	-				-1.5
3,876,907	-				+0.5
3,876,907	-				-0.2
3,877,118	-				+0.2
3,877,267	+				-1.9
3,877,267	+				-0.8
3,877,267	+				+0.5
3,877,272	-				+1.3
3,877,272	-				-0.9
3,877,410	+				+0.3
3,877,410	+				-0.2
3,877,410	+				-1.1
3,877,420	+				-0.1
3,877,560	+				+1.3
3,877,560	+				-0.9
3,877,561	-				-0.5
3,877,713	+				-0.4
3,877,713	+				+1.8
3,877,713	+				-0.0
3,877,772	+				-0.1
3,877,905	+		RR42_RS37440	0.14	-1.0
3,877,905	+		RR42_RS37440	0.14	-0.1