Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37160

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,797,232	+		RR42_RS37150	0.59	+0.4
3,797,233	-		RR42_RS37150	0.60	-0.8
3,797,254	+		RR42_RS37150	0.65	-0.6
3,797,254	+		RR42_RS37150	0.65	+0.0
3,797,254	+		RR42_RS37150	0.65	+0.1
3,797,255	-		RR42_RS37150	0.66	+0.3
3,797,255	-		RR42_RS37150	0.66	-0.2
3,797,255	-		RR42_RS37150	0.66	-0.2
3,797,271	-		RR42_RS37150	0.70	-0.1
3,797,332	+		RR42_RS37150	0.86	+0.0
3,797,332	+		RR42_RS37150	0.86	-1.7
3,797,332	+		RR42_RS37150	0.86	+0.0
3,797,332	+		RR42_RS37150	0.86	-0.6
3,797,333	-		RR42_RS37150	0.87	+0.2
3,797,333	-		RR42_RS37150	0.87	-0.2
3,797,333	-		RR42_RS37150	0.87	-0.3
3,797,351	+				-0.3
3,797,351	+				-0.1
3,797,364	+				-0.8
3,797,365	-				-1.3
3,797,365	-				+0.0
3,797,365	-				-0.5
3,797,412	+				-0.3
3,797,464	+				+0.3
3,797,465	-				+0.2
3,797,484	-				-0.4
3,797,499	+				+0.7
3,797,499	+				-0.1
3,797,548	+		RR42_RS37155	0.15	-0.1
3,797,548	+		RR42_RS37155	0.15	-0.2
3,797,548	+		RR42_RS37155	0.15	+1.3
3,797,591	+		RR42_RS37155	0.25	-0.1
3,797,591	+		RR42_RS37155	0.25	-0.4
3,797,591	+		RR42_RS37155	0.25	-0.2
3,797,591	+		RR42_RS37155	0.25	-0.5
3,797,591	+		RR42_RS37155	0.25	+0.6
3,797,592	-		RR42_RS37155	0.25	-0.2
3,797,593	-		RR42_RS37155	0.25	-0.6
3,797,630	-		RR42_RS37155	0.34	-1.1
3,797,637	+		RR42_RS37155	0.35	-1.1
3,797,637	+		RR42_RS37155	0.35	+1.2
3,797,638	-		RR42_RS37155	0.36	+0.5
3,797,638	-		RR42_RS37155	0.36	+0.3
3,797,665	+		RR42_RS37155	0.42	+0.4
3,797,673	+		RR42_RS37155	0.44	-0.3
3,797,674	-		RR42_RS37155	0.44	-0.4
3,797,674	-		RR42_RS37155	0.44	+0.2
3,797,708	+		RR42_RS37155	0.52	-0.8
3,797,709	-		RR42_RS37155	0.52	-0.7
3,797,734	+		RR42_RS37155	0.58	-0.5
3,797,734	+		RR42_RS37155	0.58	+0.0
3,797,734	+		RR42_RS37155	0.58	+0.8
3,797,734	+		RR42_RS37155	0.58	-0.1
3,797,734	+		RR42_RS37155	0.58	-1.2
3,797,735	-		RR42_RS37155	0.58	-0.8
3,797,902	-				+0.1
3,797,967	+				-0.7
3,797,967	+				-0.8
3,797,968	-				+0.6
3,797,968	-				-0.4
3,797,984	+				-0.9
3,798,000	-				+0.3
3,798,029	-				+0.8
3,798,079	+				+0.4
3,798,079	+				+0.3
3,798,079	+				+0.1
3,798,080	-				+1.7
3,798,080	-				+0.2
3,798,080	-				-0.8
3,798,110	+				+0.3
3,798,110	+				+0.4
3,798,111	-				-0.5
3,798,173	-				-1.7
3,798,173	-				+0.2
3,798,173	-				-0.9
3,798,246	+		RR42_RS37160	0.30	-0.7
3,798,247	-		RR42_RS37160	0.30	-0.7
3,798,247	-		RR42_RS37160	0.30	+1.6
3,798,247	-		RR42_RS37160	0.30	-1.1
3,798,247	-		RR42_RS37160	0.30	-0.3
3,798,247	-		RR42_RS37160	0.30	-2.0
3,798,286	+		RR42_RS37160	0.42	-0.4
3,798,292	+		RR42_RS37160	0.44	-0.9
3,798,462	+				-0.8
3,798,463	-				-0.2
3,798,492	+				-0.4
3,798,492	+				-0.5
3,798,493	-				+0.9
3,798,493	-				-1.5
3,798,496	-				-0.8
3,798,535	+				-0.3
3,798,535	+				+0.3
3,798,536	-				-1.0
3,798,641	+				-0.7
3,798,642	-				-0.3
3,798,657	+				-0.4
3,798,657	+				+0.4
3,798,658	-				-0.4
3,798,668	-				+1.0
3,798,857	+		RR42_RS37165	0.27	-0.3
3,798,857	+		RR42_RS37165	0.27	+0.2
3,798,857	+		RR42_RS37165	0.27	+1.1
3,798,858	-		RR42_RS37165	0.27	+0.5
3,798,861	+		RR42_RS37165	0.28	+0.0
3,798,861	+		RR42_RS37165	0.28	-0.4
3,798,861	+		RR42_RS37165	0.28	+0.7
3,798,861	+		RR42_RS37165	0.28	+0.5
3,798,861	+		RR42_RS37165	0.28	+0.8
3,798,861	+		RR42_RS37165	0.28	-0.3
3,798,861	+		RR42_RS37165	0.28	-2.1
3,798,861	+		RR42_RS37165	0.28	-0.2
3,798,861	+		RR42_RS37165	0.28	+0.1
3,798,862	-		RR42_RS37165	0.28	+0.1
3,798,862	-		RR42_RS37165	0.28	+0.1
3,798,862	-		RR42_RS37165	0.28	+0.1
3,798,862	-		RR42_RS37165	0.28	+0.2
3,798,862	-		RR42_RS37165	0.28	-0.9
3,798,862	-		RR42_RS37165	0.28	-0.5
3,798,862	-		RR42_RS37165	0.28	+0.3
3,798,866	-		RR42_RS37165	0.28	-0.5
3,798,978	+		RR42_RS37165	0.44	+0.2
3,799,025	+		RR42_RS37165	0.50	+0.2
3,799,164	+		RR42_RS37165	0.69	+0.8
3,799,164	+		RR42_RS37165	0.69	-0.2
3,799,164	+		RR42_RS37165	0.69	-0.6
3,799,164	+		RR42_RS37165	0.69	+0.8
3,799,164	+		RR42_RS37165	0.69	+0.7
3,799,164	+		RR42_RS37165	0.69	+0.5
3,799,164	+		RR42_RS37165	0.69	-0.3
3,799,164	+		RR42_RS37165	0.69	+0.5
3,799,164	+		RR42_RS37165	0.69	+0.7
3,799,165	-		RR42_RS37165	0.69	-0.9
3,799,165	-		RR42_RS37165	0.69	+1.2
3,799,165	-		RR42_RS37165	0.69	-0.9
3,799,165	-		RR42_RS37165	0.69	-0.3
3,799,225	+		RR42_RS37165	0.77	+1.2
3,799,225	+		RR42_RS37165	0.77	-0.6
3,799,225	+		RR42_RS37165	0.77	-1.5
3,799,225	+		RR42_RS37165	0.77	+0.1
3,799,225	+		RR42_RS37165	0.77	-0.5
3,799,225	+		RR42_RS37165	0.77	-0.2
3,799,225	+		RR42_RS37165	0.77	-0.3
3,799,226	-		RR42_RS37165	0.77	+0.8
3,799,226	-		RR42_RS37165	0.77	+0.1
3,799,239	+		RR42_RS37165	0.79	-0.4
3,799,239	+		RR42_RS37165	0.79	+0.2
3,799,239	+		RR42_RS37165	0.79	-0.2
3,799,240	-		RR42_RS37165	0.79	-0.8
3,799,240	-		RR42_RS37165	0.79	-0.3
3,799,285	+		RR42_RS37165	0.85	-0.4
3,799,286	-		RR42_RS37165	0.85	-1.1
3,799,286	-		RR42_RS37165	0.85	-0.2
3,799,328	+				+0.0
3,799,329	-				-0.7
3,799,424	+				+0.2
3,799,424	+				-0.5
3,799,424	+				-0.3
3,799,424	+				-0.5
3,799,425	-				+0.6
3,799,425	-				-0.4