Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36650

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,676,409	+		RR42_RS36645	0.26	-0.1
3,676,409	+		RR42_RS36645	0.26	-0.2
3,676,409	+		RR42_RS36645	0.26	-0.6
3,676,410	-		RR42_RS36645	0.26	+0.1
3,676,410	-		RR42_RS36645	0.26	-0.0
3,676,550	+		RR42_RS36645	0.37	-0.7
3,676,551	-		RR42_RS36645	0.37	-0.3
3,676,551	-		RR42_RS36645	0.37	+0.7
3,676,551	-		RR42_RS36645	0.37	-1.7
3,676,551	-		RR42_RS36645	0.37	+0.0
3,676,805	+		RR42_RS36645	0.58	+0.1
3,676,814	+		RR42_RS36645	0.59	+1.5
3,676,814	+		RR42_RS36645	0.59	+0.3
3,676,890	-		RR42_RS36645	0.65	+1.1
3,677,223	-				-1.5
3,677,249	+				+0.3
3,677,268	+				-0.4
3,677,269	-				-1.4
3,677,269	-				-0.5
3,677,269	-				-0.4
3,677,346	+				+0.2
3,677,347	-				+0.2
3,677,403	+				+1.1
3,677,775	+		RR42_RS36650	0.39	-0.2
3,678,105	+		RR42_RS36650	0.68	-0.8
3,678,176	+		RR42_RS36650	0.75	-0.6
3,678,184	+		RR42_RS36650	0.75	+0.8
3,678,213	+		RR42_RS36650	0.78	-0.6
3,678,213	+		RR42_RS36650	0.78	-0.7
3,678,214	-		RR42_RS36650	0.78	+0.3
3,678,376	-				+0.7
3,678,376	-				+0.3
3,678,439	-				+0.2
3,678,460	-				-0.3
3,678,477	+				-0.3
3,678,478	-				+0.1
3,678,478	-				-0.1
3,678,921	+				-1.3
3,678,973	+				+0.2
3,679,087	+		RR42_RS36655	0.10	-1.7
3,679,088	-		RR42_RS36655	0.10	-0.0
3,679,088	-		RR42_RS36655	0.10	-2.1
3,679,088	-		RR42_RS36655	0.10	-1.7
3,679,088	-		RR42_RS36655	0.10	-0.3
3,679,149	+		RR42_RS36655	0.14	+0.4
3,679,149	+		RR42_RS36655	0.14	+0.3
3,679,224	+		RR42_RS36655	0.19	-0.2
3,679,225	-		RR42_RS36655	0.19	+0.0
3,679,225	-		RR42_RS36655	0.19	-1.4
3,679,225	-		RR42_RS36655	0.19	-0.8
3,679,225	-		RR42_RS36655	0.19	+1.3
3,679,315	+		RR42_RS36655	0.25	-0.5