Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36135

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,554,098	+		RR42_RS36130	0.11	-1.1
3,554,099	-		RR42_RS36130	0.11	+0.3
3,554,393	-		RR42_RS36130	0.45	-0.5
3,554,428	+		RR42_RS36130	0.50	-1.4
3,554,428	+		RR42_RS36130	0.50	+0.9
3,554,429	-		RR42_RS36130	0.50	-1.0
3,554,560	+		RR42_RS36130	0.65	+0.7
3,554,561	-		RR42_RS36130	0.65	+0.3
3,554,631	+		RR42_RS36130	0.73	-0.8
3,554,631	+		RR42_RS36130	0.73	-1.3
3,554,632	-		RR42_RS36130	0.74	-0.9
3,554,644	+		RR42_RS36130	0.75	-0.7
3,554,644	+		RR42_RS36130	0.75	-1.7
3,554,644	+		RR42_RS36130	0.75	-0.8
3,554,645	-		RR42_RS36130	0.75	-0.5
3,554,738	+		RR42_RS36130	0.86	-0.7
3,554,738	+		RR42_RS36130	0.86	-0.5
3,554,738	+		RR42_RS36130	0.86	-1.5
3,554,739	-		RR42_RS36130	0.86	-0.6
3,554,739	-		RR42_RS36130	0.86	+0.5
3,554,740	+		RR42_RS36130	0.86	-1.5
3,554,740	+		RR42_RS36130	0.86	-0.6
3,554,740	-		RR42_RS36130	0.86	-1.7
3,554,741	-		RR42_RS36130	0.86	-1.1
3,554,741	-		RR42_RS36130	0.86	-0.8
3,554,741	-		RR42_RS36130	0.86	-0.2
3,555,030	-				+0.1
3,555,030	-				+0.6
3,555,597	-		RR42_RS36135	0.57	-0.2
3,555,626	+		RR42_RS36135	0.61	+0.1
3,555,627	-		RR42_RS36135	0.61	-1.3
3,555,627	-		RR42_RS36135	0.61	+1.0
3,555,713	+		RR42_RS36135	0.70	-0.1
3,555,713	+		RR42_RS36135	0.70	+0.2
3,555,714	-		RR42_RS36135	0.70	+0.0
3,555,714	-		RR42_RS36135	0.70	-0.0
3,555,737	+		RR42_RS36135	0.73	+0.7
3,555,737	+		RR42_RS36135	0.73	+0.3
3,555,738	-		RR42_RS36135	0.73	+0.2
3,556,119	+		RR42_RS36140	0.12	-0.1
3,556,120	-		RR42_RS36140	0.12	+0.1
3,556,142	+		RR42_RS36140	0.14	-1.2
3,556,142	+		RR42_RS36140	0.14	-0.2
3,556,142	+		RR42_RS36140	0.14	+0.2
3,556,142	+		RR42_RS36140	0.14	+1.2
3,556,142	+		RR42_RS36140	0.14	+2.0
3,556,143	-		RR42_RS36140	0.14	-0.2
3,556,143	-		RR42_RS36140	0.14	-0.1
3,556,143	-		RR42_RS36140	0.14	+1.1
3,556,143	-		RR42_RS36140	0.14	+0.8
3,556,214	+		RR42_RS36140	0.21	+0.2
3,556,214	+		RR42_RS36140	0.21	-0.4
3,556,215	-		RR42_RS36140	0.21	-1.0
3,556,215	-		RR42_RS36140	0.21	+1.1
3,556,215	-		RR42_RS36140	0.21	+0.5
3,556,215	-		RR42_RS36140	0.21	+0.9
3,556,438	-		RR42_RS36140	0.42	-0.1
3,556,577	+		RR42_RS36140	0.56	+0.5
3,556,577	+		RR42_RS36140	0.56	-0.1
3,556,577	+		RR42_RS36140	0.56	-1.0
3,556,578	-		RR42_RS36140	0.56	+0.2
3,556,578	-		RR42_RS36140	0.56	+0.4
3,556,578	-		RR42_RS36140	0.56	-0.8
3,556,607	+		RR42_RS36140	0.58	+0.3
3,556,866	+		RR42_RS36140	0.83	+0.5