Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34595

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,201,155	+				+0.9
3,201,200	+				+0.3
3,201,200	+				-0.3
3,201,200	+				-0.2
3,201,200	+				+0.5
3,201,201	-				+0.2
3,201,201	-				+1.9
3,201,366	+				+0.7
3,201,366	+				-0.0
3,201,567	+		RR42_RS34590	0.34	-1.7
3,201,567	+		RR42_RS34590	0.34	-1.0
3,201,567	+		RR42_RS34590	0.34	-0.0
3,201,568	-		RR42_RS34590	0.34	-0.1
3,201,568	-		RR42_RS34590	0.34	-0.8
3,201,714	+		RR42_RS34590	0.58	-0.6
3,201,714	+		RR42_RS34590	0.58	-0.2
3,201,715	-		RR42_RS34590	0.58	+0.2
3,201,831	+		RR42_RS34590	0.77	+2.3
3,201,832	-		RR42_RS34590	0.77	+1.2
3,201,832	-		RR42_RS34590	0.77	-1.3
3,201,832	-		RR42_RS34590	0.77	+0.7
3,201,832	-		RR42_RS34590	0.77	+0.6
3,201,837	+		RR42_RS34590	0.78	+0.7
3,201,837	+		RR42_RS34590	0.78	+0.1
3,201,837	+		RR42_RS34590	0.78	+0.3
3,201,838	-		RR42_RS34590	0.78	-0.5
3,201,838	-		RR42_RS34590	0.78	+0.3
3,202,168	+				+0.8
3,202,168	+				+0.6
3,202,169	-				-0.5
3,202,499	-		RR42_RS34595	0.22	-0.2
3,202,639	+		RR42_RS34595	0.29	-0.3
3,202,640	-		RR42_RS34595	0.29	+0.2
3,203,227	+		RR42_RS34595	0.57	-0.4
3,203,227	+		RR42_RS34595	0.57	+0.1
3,203,228	-		RR42_RS34595	0.57	-0.1
3,203,260	+		RR42_RS34595	0.58	-0.0
3,203,626	+		RR42_RS34595	0.75	-0.4
3,203,686	+		RR42_RS34595	0.78	-0.5
3,203,687	-		RR42_RS34595	0.78	+0.0
3,203,730	-		RR42_RS34595	0.80	-0.1
3,203,731	+		RR42_RS34595	0.80	+0.8
3,203,731	+		RR42_RS34595	0.80	+1.3
3,203,731	+		RR42_RS34595	0.80	-0.5
3,203,731	+		RR42_RS34595	0.80	+0.1
3,203,731	+		RR42_RS34595	0.80	-1.1
3,203,732	-		RR42_RS34595	0.80	-0.4
3,203,732	-		RR42_RS34595	0.80	+0.8
3,204,026	-				+1.1
3,204,178	+				+0.4
3,204,179	-				+0.9
3,204,273	-				+0.3
3,204,273	-				-0.0
3,204,281	+				+0.1
3,204,281	+				+1.0
3,204,281	+				+0.1
3,204,282	-				+0.6
3,204,282	-				-0.3
3,204,282	-				+0.8
3,204,285	+				-0.5
3,204,285	+				-0.9
3,204,300	+				-0.7
3,204,300	+				-0.2
3,204,300	+				-0.1
3,204,300	+				+0.7
3,204,301	-				-0.0
3,204,301	-				-0.1
3,204,301	-				+1.1
3,204,478	-				+1.1
3,204,600	+		RR42_RS34600	0.19	-0.3
3,204,601	-		RR42_RS34600	0.19	-1.1
3,204,630	+		RR42_RS34600	0.22	-0.9
3,204,631	-		RR42_RS34600	0.22	-0.1
3,204,631	-		RR42_RS34600	0.22	+0.9
3,204,698	+		RR42_RS34600	0.30	-1.0
3,204,698	+		RR42_RS34600	0.30	+0.1
3,204,699	-		RR42_RS34600	0.30	+0.1
3,204,699	-		RR42_RS34600	0.30	-0.1
3,204,699	-		RR42_RS34600	0.30	-0.2
3,204,699	-		RR42_RS34600	0.30	-0.2
3,204,926	-		RR42_RS34600	0.54	-0.4
3,204,945	+		RR42_RS34600	0.56	+0.8
3,204,945	+		RR42_RS34600	0.56	-0.4
3,205,140	+		RR42_RS34600	0.77	+0.4
3,205,140	+		RR42_RS34600	0.77	-0.5