Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31355

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,408,170	+		RR42_RS31345	0.30	-0.8
2,408,170	+		RR42_RS31345	0.30	-0.1
2,408,171	-		RR42_RS31345	0.30	-0.0
2,408,224	+		RR42_RS31345	0.47	-0.4
2,408,224	+		RR42_RS31345	0.47	+1.2
2,408,224	+		RR42_RS31345	0.47	+0.9
2,408,225	-		RR42_RS31345	0.47	+0.8
2,408,225	-		RR42_RS31345	0.47	+0.0
2,408,285	-		RR42_RS31345	0.67	+0.2
2,408,308	+		RR42_RS31345	0.74	-0.2
2,408,308	+		RR42_RS31345	0.74	+0.5
2,408,308	+		RR42_RS31345	0.74	+0.8
2,408,309	-		RR42_RS31345	0.74	+0.2
2,408,356	+		RR42_RS31345	0.89	+0.9
2,408,356	+		RR42_RS31345	0.89	+0.0
2,408,481	+				+0.2
2,408,492	+				-1.9
2,408,493	-				+0.3
2,408,746	+		RR42_RS31350	0.38	-0.1
2,408,746	+		RR42_RS31350	0.38	+0.2
2,408,747	-		RR42_RS31350	0.39	+0.6
2,408,750	-		RR42_RS31350	0.39	-0.3
2,408,887	+		RR42_RS31350	0.64	-0.1
2,408,887	+		RR42_RS31350	0.64	+0.1
2,408,887	+		RR42_RS31350	0.64	+0.1
2,408,887	+		RR42_RS31350	0.64	+0.1
2,409,159	-				+0.6
2,409,351	+		RR42_RS31355	0.24	-0.9
2,409,531	+		RR42_RS31355	0.47	-1.9
2,409,541	+		RR42_RS31355	0.49	-0.5
2,409,541	+		RR42_RS31355	0.49	-0.1
2,409,542	-		RR42_RS31355	0.49	-0.2
2,409,631	-		RR42_RS31355	0.60	-2.0
2,410,019	+				+0.1
2,410,019	+				+0.5
2,410,019	+				-0.5
2,410,019	+				+0.2
2,410,019	+				-0.1
2,410,019	+				-0.4
2,410,020	-				-0.2
2,410,020	-				+0.7
2,410,020	-				-0.7
2,410,038	+				-0.5
2,410,088	-				-0.4
2,410,088	-				-0.2
2,410,154	-				-0.4
2,410,154	-				+0.1
2,410,159	+				+0.4
2,410,160	-				+0.2
2,410,160	-				+0.3
2,410,289	+		RR42_RS31360	0.11	+0.3
2,410,289	+		RR42_RS31360	0.11	+0.3
2,410,289	+		RR42_RS31360	0.11	+0.9
2,410,289	+		RR42_RS31360	0.11	-1.4
2,410,289	+		RR42_RS31360	0.11	+0.1
2,410,290	-		RR42_RS31360	0.11	-0.6
2,410,300	+		RR42_RS31360	0.11	-0.4
2,410,360	+		RR42_RS31360	0.14	-0.1
2,410,360	+		RR42_RS31360	0.14	+0.7
2,410,360	+		RR42_RS31360	0.14	+0.6
2,410,389	-		RR42_RS31360	0.16	-0.2
2,410,389	-		RR42_RS31360	0.16	-1.1
2,410,649	-		RR42_RS31360	0.28	+0.7
2,410,649	-		RR42_RS31360	0.28	+1.0