Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31100

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,356,349	-				+0.3
2,356,349	-				+0.2
2,356,427	-				+0.2
2,356,484	+				+0.2
2,356,977	-		RR42_RS31095	0.64	+0.3
2,357,079	+				-0.1
2,357,079	+				-0.1
2,357,140	-				+1.7
2,357,322	+				-0.1
2,357,322	+				+0.4
2,357,323	-				+0.9
2,357,368	+				+0.4
2,357,368	+				+0.1
2,357,369	-				-0.1
2,357,416	+				-2.6
2,357,416	+				+0.2
2,357,416	+				-1.7
2,357,417	-				-0.6
2,357,647	+		RR42_RS31100	0.37	-0.0
2,357,648	-		RR42_RS31100	0.37	+0.0
2,357,648	-		RR42_RS31100	0.37	-0.3
2,357,760	-		RR42_RS31100	0.50	+1.0
2,357,933	+		RR42_RS31100	0.70	+1.5
2,357,933	+		RR42_RS31100	0.70	+0.5
2,358,124	+				+0.1
2,358,163	-				-0.1
2,358,225	-				+0.6
2,358,335	-				-1.2
2,358,335	-				+1.3
2,358,341	+				+0.4
2,358,342	-				+0.6
2,358,415	+				+0.2
2,358,415	+				-0.5
2,358,415	+				+0.2
2,358,416	-				-1.1
2,358,416	-				-0.6
2,358,416	-				-0.4
2,358,416	-				+0.6
2,358,430	+				-0.5
2,358,430	+				-0.2
2,358,430	+				-0.1
2,358,430	+				+1.1
2,358,446	-				-1.7
2,358,458	-		RR42_RS31105	0.11	-0.2
2,358,458	-		RR42_RS31105	0.11	+0.4
2,358,523	+		RR42_RS31105	0.16	+1.0
2,358,523	+		RR42_RS31105	0.16	+0.8
2,358,533	+		RR42_RS31105	0.17	-0.8
2,358,569	-		RR42_RS31105	0.20	-1.0
2,358,596	+		RR42_RS31105	0.23	+1.1
2,358,597	-		RR42_RS31105	0.23	-1.0
2,358,597	-		RR42_RS31105	0.23	-1.3
2,358,695	-		RR42_RS31105	0.31	+2.1
2,358,784	+		RR42_RS31105	0.39	+0.1
2,358,784	+		RR42_RS31105	0.39	+0.5
2,358,784	+		RR42_RS31105	0.39	+1.4
2,358,784	+		RR42_RS31105	0.39	-1.5
2,358,785	-		RR42_RS31105	0.39	-0.1
2,358,846	-		RR42_RS31105	0.44	-0.1
2,358,928	+		RR42_RS31105	0.51	+1.9
2,358,929	-		RR42_RS31105	0.51	+0.4
2,358,929	-		RR42_RS31105	0.51	-0.7
2,358,929	-		RR42_RS31105	0.51	-1.7