Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30500

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,215,754	+		RR42_RS30495	0.60	+0.3
2,215,754	+		RR42_RS30495	0.60	+0.5
2,215,754	+		RR42_RS30495	0.60	-1.2
2,215,754	+		RR42_RS30495	0.60	+0.1
2,215,755	-		RR42_RS30495	0.61	+0.5
2,215,755	-		RR42_RS30495	0.61	-0.6
2,215,755	-		RR42_RS30495	0.61	+0.4
2,215,852	-		RR42_RS30495	0.68	-0.0
2,215,883	+		RR42_RS30495	0.71	+0.2
2,215,883	+		RR42_RS30495	0.71	+0.2
2,215,884	-		RR42_RS30495	0.71	-0.2
2,216,040	+		RR42_RS30495	0.84	-0.6
2,216,041	-		RR42_RS30495	0.84	+0.4
2,216,264	-				-0.4
2,216,276	+				+0.2
2,216,276	+				-0.4
2,216,306	+				-0.1
2,216,307	-				-0.4
2,216,493	-				+0.1
2,216,791	+		RR42_RS30500	0.17	+0.4
2,216,792	-		RR42_RS30500	0.17	-0.6
2,216,792	-		RR42_RS30500	0.17	-1.3
2,216,794	+		RR42_RS30500	0.17	-1.2
2,216,794	+		RR42_RS30500	0.17	+0.1
2,216,795	-		RR42_RS30500	0.17	+0.3
2,216,795	-		RR42_RS30500	0.17	-0.3
2,216,795	-		RR42_RS30500	0.17	-0.8
2,216,947	+		RR42_RS30500	0.28	+1.6
2,216,947	+		RR42_RS30500	0.28	-1.3
2,216,948	-		RR42_RS30500	0.28	+0.3
2,216,948	-		RR42_RS30500	0.28	+0.2
2,216,948	-		RR42_RS30500	0.28	+0.8
2,216,948	-		RR42_RS30500	0.28	+0.8
2,216,948	-		RR42_RS30500	0.28	-0.7
2,217,094	+		RR42_RS30500	0.39	-0.0
2,217,095	-		RR42_RS30500	0.39	-2.1
2,217,095	-		RR42_RS30500	0.39	+0.1
2,217,095	-		RR42_RS30500	0.39	+0.0
2,217,493	+		RR42_RS30500	0.69	+0.5
2,217,494	-		RR42_RS30500	0.69	-2.8
2,218,096	+				+0.3
2,218,096	+				-0.1
2,218,096	+				-0.2
2,218,096	+				+0.3
2,218,097	-				-0.6
2,218,165	+		RR42_RS30505	0.11	-0.6
2,218,165	+		RR42_RS30505	0.11	+1.0
2,218,166	-		RR42_RS30505	0.11	+0.3
2,218,193	-		RR42_RS30505	0.13	-0.4
2,218,232	-		RR42_RS30505	0.16	-0.2
2,218,232	-		RR42_RS30505	0.16	+0.6
2,218,232	-		RR42_RS30505	0.16	+0.3
2,218,330	+		RR42_RS30505	0.24	-1.2
2,218,331	-		RR42_RS30505	0.24	+1.0
2,218,561	+		RR42_RS30505	0.44	+0.5
2,218,562	-		RR42_RS30505	0.44	+0.1
2,218,562	-		RR42_RS30505	0.44	-0.0
2,218,758	+		RR42_RS30505	0.60	+1.4