Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30485

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,213,244	+		RR42_RS30480	0.28	+1.2
2,213,245	-		RR42_RS30480	0.28	+0.8
2,213,245	-		RR42_RS30480	0.28	-0.4
2,213,416	+		RR42_RS30480	0.46	+0.4
2,213,417	-		RR42_RS30480	0.46	+0.2
2,213,545	+		RR42_RS30480	0.59	-0.4
2,213,545	+		RR42_RS30480	0.59	-0.4
2,213,546	-		RR42_RS30480	0.60	+0.5
2,213,546	-		RR42_RS30480	0.60	+0.2
2,213,546	-		RR42_RS30480	0.60	-0.6
2,213,622	+		RR42_RS30480	0.67	-1.2
2,213,622	+		RR42_RS30480	0.67	+0.2
2,213,622	+		RR42_RS30480	0.67	+0.2
2,213,623	-		RR42_RS30480	0.67	+0.5
2,213,905	+				-0.1
2,213,905	+				+0.8
2,213,907	+				+0.6
2,213,907	+				-0.2
2,213,907	+				-1.2
2,213,972	+				+0.6
2,213,978	-				-0.4
2,214,004	+				-1.3
2,214,036	+				-0.5
2,214,037	-				-0.9
2,214,219	+		RR42_RS30485	0.13	-0.9
2,214,220	-		RR42_RS30485	0.13	-1.2
2,214,221	+		RR42_RS30485	0.14	-0.6
2,214,221	+		RR42_RS30485	0.14	+0.0
2,214,222	-		RR42_RS30485	0.14	+0.3
2,214,284	+		RR42_RS30485	0.31	-0.4
2,214,284	+		RR42_RS30485	0.31	-1.3
2,214,381	-		RR42_RS30485	0.59	+0.4
2,214,408	+		RR42_RS30485	0.66	-2.8
2,214,409	-		RR42_RS30485	0.67	-0.7
2,214,409	-		RR42_RS30485	0.67	-1.7
2,214,494	+				-2.8
2,214,494	+				-1.9
2,214,495	-				+1.8
2,214,517	-				+0.2
2,214,517	-				-0.5
2,214,546	+				-0.2
2,214,547	-				-0.3
2,214,766	-		RR42_RS30490	0.59	-1.3
2,214,900	+				+0.4
2,214,901	-				-1.2
2,215,004	+				-0.2
2,215,004	+				-0.3
2,215,004	+				-2.0
2,215,004	+				+0.3
2,215,005	-				-0.8
2,215,352	+		RR42_RS30495	0.28	-0.2
2,215,352	+		RR42_RS30495	0.28	+0.2
2,215,361	+		RR42_RS30495	0.29	-0.3
2,215,362	-		RR42_RS30495	0.29	+0.2
2,215,362	-		RR42_RS30495	0.29	-1.2
2,215,362	-		RR42_RS30495	0.29	-0.8
2,215,362	-		RR42_RS30495	0.29	-0.9
2,215,368	+		RR42_RS30495	0.29	+0.5
2,215,368	+		RR42_RS30495	0.29	+0.1
2,215,369	-		RR42_RS30495	0.29	+0.2
2,215,369	-		RR42_RS30495	0.29	-0.4
2,215,526	+		RR42_RS30495	0.42	-0.3