Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26235

Experiment: R2A with D-Cycloserine 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26230 and RR42_RS26235 are separated by 395 nucleotidesRR42_RS26235 and RR42_RS26240 are separated by 500 nucleotides RR42_RS26230: RR42_RS26230 - MFS transporter, at 1,241,648 to 1,242,919 _RS26230 RR42_RS26235: RR42_RS26235 - GntR family transcriptional regulator, at 1,243,315 to 1,244,064 _RS26235 RR42_RS26240: RR42_RS26240 - 4-aminobutyrate aminotransferase, at 1,244,565 to 1,245,827 _RS26240 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -2 -1 0 1 2at 1242.456 kb on + strand, within RR42_RS26230at 1242.457 kb on - strand, within RR42_RS26230at 1242.539 kb on + strand, within RR42_RS26230at 1242.539 kb on + strand, within RR42_RS26230at 1242.540 kb on - strand, within RR42_RS26230at 1242.577 kb on + strand, within RR42_RS26230at 1242.591 kb on + strand, within RR42_RS26230at 1242.592 kb on - strand, within RR42_RS26230at 1242.720 kb on + strand, within RR42_RS26230at 1242.834 kb on + strandat 1242.834 kb on + strandat 1242.954 kb on - strandat 1242.998 kb on + strandat 1242.998 kb on + strandat 1242.998 kb on + strandat 1242.999 kb on - strandat 1242.999 kb on - strandat 1243.069 kb on + strandat 1243.070 kb on - strandat 1243.070 kb on - strandat 1243.072 kb on + strandat 1243.072 kb on + strandat 1243.072 kb on + strandat 1243.073 kb on - strandat 1243.073 kb on - strandat 1243.073 kb on - strandat 1243.285 kb on + strandat 1243.286 kb on - strandat 1243.286 kb on - strandat 1243.317 kb on - strandat 1243.487 kb on + strand, within RR42_RS26235at 1243.516 kb on + strand, within RR42_RS26235at 1243.516 kb on + strand, within RR42_RS26235at 1243.516 kb on + strand, within RR42_RS26235at 1243.516 kb on + strand, within RR42_RS26235at 1243.517 kb on - strand, within RR42_RS26235at 1243.593 kb on + strand, within RR42_RS26235at 1243.846 kb on + strand, within RR42_RS26235at 1243.847 kb on - strand, within RR42_RS26235at 1243.872 kb on + strand, within RR42_RS26235at 1243.874 kb on + strand, within RR42_RS26235at 1244.027 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.057 kb on - strandat 1244.106 kb on - strandat 1244.106 kb on - strandat 1244.285 kb on + strandat 1244.413 kb on - strandat 1244.446 kb on + strandat 1244.446 kb on + strandat 1244.637 kb on + strandat 1244.638 kb on - strandat 1244.689 kb on - strandat 1244.689 kb on - strandat 1244.724 kb on - strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1245.024 kb on + strand, within RR42_RS26240at 1245.024 kb on + strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml
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1,242,456 + RR42_RS26230 0.64 -0.5
1,242,457 - RR42_RS26230 0.64 -0.5
1,242,539 + RR42_RS26230 0.70 +0.2
1,242,539 + RR42_RS26230 0.70 -0.3
1,242,540 - RR42_RS26230 0.70 -0.0
1,242,577 + RR42_RS26230 0.73 +0.1
1,242,591 + RR42_RS26230 0.74 +0.2
1,242,592 - RR42_RS26230 0.74 +0.6
1,242,720 + RR42_RS26230 0.84 -0.1
1,242,834 + -0.4
1,242,834 + -2.0
1,242,954 - -0.3
1,242,998 + -1.6
1,242,998 + -0.7
1,242,998 + -0.3
1,242,999 - -0.6
1,242,999 - +0.4
1,243,069 + +0.1
1,243,070 - -0.3
1,243,070 - -0.1
1,243,072 + -0.5
1,243,072 + -1.5
1,243,072 + +1.0
1,243,073 - -1.7
1,243,073 - +0.3
1,243,073 - -0.6
1,243,285 + -0.0
1,243,286 - -0.0
1,243,286 - -0.4
1,243,317 - -0.1
1,243,487 + RR42_RS26235 0.23 +0.3
1,243,516 + RR42_RS26235 0.27 +1.4
1,243,516 + RR42_RS26235 0.27 +0.9
1,243,516 + RR42_RS26235 0.27 -0.0
1,243,516 + RR42_RS26235 0.27 -0.0
1,243,517 - RR42_RS26235 0.27 -0.9
1,243,593 + RR42_RS26235 0.37 -0.1
1,243,846 + RR42_RS26235 0.71 +0.3
1,243,847 - RR42_RS26235 0.71 +1.5
1,243,872 + RR42_RS26235 0.74 -0.3
1,243,874 + RR42_RS26235 0.75 +0.5
1,244,027 + -0.5
1,244,056 + -0.9
1,244,056 + -1.1
1,244,056 + +0.6
1,244,056 + +1.0
1,244,057 - -0.1
1,244,106 - +0.4
1,244,106 - -0.2
1,244,285 + -0.5
1,244,413 - +1.0
1,244,446 + -0.0
1,244,446 + -0.4
1,244,637 + +1.8
1,244,638 - -2.4
1,244,689 - +0.2
1,244,689 - +0.1
1,244,724 - RR42_RS26240 0.13 +0.3
1,244,817 + RR42_RS26240 0.20 +0.3
1,244,817 + RR42_RS26240 0.20 +0.3
1,244,817 + RR42_RS26240 0.20 +0.8
1,244,817 + RR42_RS26240 0.20 +0.1
1,244,817 + RR42_RS26240 0.20 -0.7
1,244,817 + RR42_RS26240 0.20 -0.8
1,244,817 + RR42_RS26240 0.20 +0.7
1,244,817 + RR42_RS26240 0.20 +0.8
1,244,818 - RR42_RS26240 0.20 -1.9
1,244,818 - RR42_RS26240 0.20 -1.6
1,244,818 - RR42_RS26240 0.20 +0.1
1,244,818 - RR42_RS26240 0.20 +0.1
1,244,818 - RR42_RS26240 0.20 -0.5
1,244,818 - RR42_RS26240 0.20 +0.2
1,244,818 - RR42_RS26240 0.20 -0.2
1,245,024 + RR42_RS26240 0.36 +0.5
1,245,024 + RR42_RS26240 0.36 +0.6
1,245,025 - RR42_RS26240 0.36 -1.8
1,245,025 - RR42_RS26240 0.36 -0.6

Or see this region's nucleotide sequence