Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24925 and RR42_RS24930 are separated by 105 nucleotides RR42_RS24930 and RR42_RS24935 are separated by 170 nucleotides
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
RR42_RS24930: RR42_RS24930 - AraC family transcriptional regulator, at 930,750 to 931,346
_RS24930
RR42_RS24935: RR42_RS24935 - formyl-CoA transferase, at 931,517 to 932,701
_RS24935
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand at 931.016 kb on + strand, within RR42_RS24930 at 931.509 kb on + strand at 931.516 kb on + strand at 931.517 kb on - strand at 931.537 kb on + strand at 931.621 kb on + strand at 931.839 kb on - strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.964 kb on + strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 931.965 kb on - strand, within RR42_RS24935 at 932.063 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.204 kb on + strand, within RR42_RS24935 at 932.205 kb on - strand, within RR42_RS24935 at 932.329 kb on + strand, within RR42_RS24935 at 932.330 kb on - strand, within RR42_RS24935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 929,959 - RR42_RS24925 0.24 -0.3 930,146 - RR42_RS24925 0.45 -0.4 930,146 - RR42_RS24925 0.45 -0.3 930,146 - RR42_RS24925 0.45 -0.5 930,166 + RR42_RS24925 0.47 -0.1 930,167 - RR42_RS24925 0.47 +0.1 930,177 + RR42_RS24925 0.48 -0.3 930,264 + RR42_RS24925 0.58 +0.3 930,264 + RR42_RS24925 0.58 -0.6 930,264 + RR42_RS24925 0.58 -0.0 930,388 + RR42_RS24925 0.72 +0.0 930,389 - RR42_RS24925 0.72 -2.8 930,501 + RR42_RS24925 0.84 +1.2 930,502 - RR42_RS24925 0.84 +0.0 930,564 + -0.3 930,564 + -0.0 930,564 + +0.3 930,564 + -1.6 930,565 - +0.1 930,688 + +0.4 930,689 - -0.9 930,718 - -0.2 931,016 + RR42_RS24930 0.45 -1.5 931,509 + +0.3 931,516 + +0.4 931,517 - +0.3 931,537 + -0.2 931,621 + +0.4 931,839 - RR42_RS24935 0.27 -1.5 931,964 + RR42_RS24935 0.38 -0.3 931,964 + RR42_RS24935 0.38 +0.7 931,964 + RR42_RS24935 0.38 -0.0 931,964 + RR42_RS24935 0.38 -1.3 931,965 - RR42_RS24935 0.38 -0.3 931,965 - RR42_RS24935 0.38 +0.1 931,965 - RR42_RS24935 0.38 -0.4 931,965 - RR42_RS24935 0.38 -0.8 932,063 + RR42_RS24935 0.46 -0.3 932,204 + RR42_RS24935 0.58 -0.6 932,204 + RR42_RS24935 0.58 -0.9 932,204 + RR42_RS24935 0.58 +0.0 932,204 + RR42_RS24935 0.58 +0.7 932,205 - RR42_RS24935 0.58 -0.3 932,329 + RR42_RS24935 0.69 -0.1 932,330 - RR42_RS24935 0.69 +0.4
Or see this region's nucleotide sequence