Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides RR42_RS24830 and RR42_RS24835 are separated by 34 nucleotides
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385
_RS24835
Position (kb) 908
909
910 Strain fitness (log2 ratio) -1
0
1
2
3 at 907.219 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.533 kb on + strand, within RR42_RS24825 at 907.534 kb on - strand, within RR42_RS24825 at 907.644 kb on + strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.726 kb on - strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 908.262 kb on + strand at 908.263 kb on - strand at 908.306 kb on - strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 909.125 kb on + strand at 909.126 kb on - strand at 909.126 kb on - strand at 909.371 kb on + strand, within RR42_RS24835 at 909.372 kb on - strand, within RR42_RS24835 at 909.589 kb on + strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.679 kb on + strand, within RR42_RS24835 at 909.680 kb on - strand, within RR42_RS24835 at 909.748 kb on + strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.782 kb on - strand, within RR42_RS24835 at 909.836 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.919 kb on + strand, within RR42_RS24835 at 909.920 kb on - strand, within RR42_RS24835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 907,219 + RR42_RS24825 0.17 +0.7 907,368 + RR42_RS24825 0.30 +3.2 907,368 + RR42_RS24825 0.30 +0.9 907,434 + RR42_RS24825 0.36 +1.9 907,434 + RR42_RS24825 0.36 -0.9 907,434 + RR42_RS24825 0.36 -0.1 907,435 - RR42_RS24825 0.36 -0.8 907,435 - RR42_RS24825 0.36 +0.6 907,435 - RR42_RS24825 0.36 -0.4 907,533 + RR42_RS24825 0.44 +0.6 907,534 - RR42_RS24825 0.44 -1.5 907,644 + RR42_RS24825 0.54 +1.0 907,645 - RR42_RS24825 0.54 +0.2 907,645 - RR42_RS24825 0.54 +0.2 907,716 + RR42_RS24825 0.60 -1.2 907,716 + RR42_RS24825 0.60 +1.1 907,716 + RR42_RS24825 0.60 -0.4 907,717 - RR42_RS24825 0.60 +0.0 907,717 - RR42_RS24825 0.60 -0.7 907,726 - RR42_RS24825 0.61 -0.0 907,787 + RR42_RS24825 0.66 -0.2 907,787 + RR42_RS24825 0.66 +0.5 908,262 + -1.4 908,263 - -1.4 908,306 - RR42_RS24830 0.12 -1.4 908,355 + RR42_RS24830 0.18 +0.3 908,355 + RR42_RS24830 0.18 +0.2 908,356 - RR42_RS24830 0.18 -0.3 908,356 - RR42_RS24830 0.18 -0.6 909,125 + +1.4 909,126 - +0.2 909,126 - +0.1 909,371 + RR42_RS24835 0.24 +0.5 909,372 - RR42_RS24835 0.24 +0.3 909,589 + RR42_RS24835 0.40 +1.3 909,590 - RR42_RS24835 0.41 -0.1 909,590 - RR42_RS24835 0.41 +0.1 909,679 + RR42_RS24835 0.47 -0.6 909,680 - RR42_RS24835 0.47 +0.6 909,748 + RR42_RS24835 0.52 -0.4 909,749 - RR42_RS24835 0.52 +0.8 909,749 - RR42_RS24835 0.52 -0.5 909,782 - RR42_RS24835 0.55 -0.4 909,836 - RR42_RS24835 0.59 -0.2 909,884 - RR42_RS24835 0.62 -0.5 909,884 - RR42_RS24835 0.62 -1.0 909,919 + RR42_RS24835 0.65 -0.7 909,920 - RR42_RS24835 0.65 -0.0
Or see this region's nucleotide sequence