Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24815 and RR42_RS24820 are separated by 6 nucleotides RR42_RS24820 and RR42_RS24825 are separated by 129 nucleotides
RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681
_RS24815
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
Position (kb) 905
906
907 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 904.703 kb on - strand at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.238 kb on + strand, within RR42_RS24815 at 905.442 kb on + strand, within RR42_RS24815 at 905.667 kb on + strand at 905.705 kb on - strand at 905.705 kb on - strand at 906.062 kb on - strand, within RR42_RS24820 at 906.062 kb on - strand, within RR42_RS24820 at 906.334 kb on - strand, within RR42_RS24820 at 906.402 kb on + strand, within RR42_RS24820 at 906.892 kb on - strand at 907.078 kb on + strand at 907.219 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.533 kb on + strand, within RR42_RS24825 at 907.534 kb on - strand, within RR42_RS24825 at 907.644 kb on + strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.726 kb on - strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 904,703 - +0.2 905,067 + RR42_RS24815 0.40 +0.2 905,067 + RR42_RS24815 0.40 -0.4 905,067 + RR42_RS24815 0.40 -1.0 905,238 + RR42_RS24815 0.56 -0.4 905,442 + RR42_RS24815 0.76 -0.5 905,667 + -0.0 905,705 - -0.2 905,705 - +1.0 906,062 - RR42_RS24820 0.31 +4.1 906,062 - RR42_RS24820 0.31 +0.4 906,334 - RR42_RS24820 0.54 +0.1 906,402 + RR42_RS24820 0.59 +0.5 906,892 - +0.3 907,078 + +0.2 907,219 + RR42_RS24825 0.17 +0.7 907,368 + RR42_RS24825 0.30 +3.2 907,368 + RR42_RS24825 0.30 +0.9 907,434 + RR42_RS24825 0.36 +1.9 907,434 + RR42_RS24825 0.36 -0.9 907,434 + RR42_RS24825 0.36 -0.1 907,435 - RR42_RS24825 0.36 -0.8 907,435 - RR42_RS24825 0.36 +0.6 907,435 - RR42_RS24825 0.36 -0.4 907,533 + RR42_RS24825 0.44 +0.6 907,534 - RR42_RS24825 0.44 -1.5 907,644 + RR42_RS24825 0.54 +1.0 907,645 - RR42_RS24825 0.54 +0.2 907,645 - RR42_RS24825 0.54 +0.2 907,716 + RR42_RS24825 0.60 -1.2 907,716 + RR42_RS24825 0.60 +1.1 907,716 + RR42_RS24825 0.60 -0.4 907,717 - RR42_RS24825 0.60 +0.0 907,717 - RR42_RS24825 0.60 -0.7 907,726 - RR42_RS24825 0.61 -0.0 907,787 + RR42_RS24825 0.66 -0.2 907,787 + RR42_RS24825 0.66 +0.5
Or see this region's nucleotide sequence