Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24505 and RR42_RS24510 are separated by 8 nucleotides RR42_RS24510 and RR42_RS24515 overlap by 4 nucleotides RR42_RS24515 and RR42_RS24520 overlap by 4 nucleotides
RR42_RS24505: RR42_RS24505 - hypothetical protein, at 830,264 to 831,919
_RS24505
RR42_RS24510: RR42_RS24510 - hypothetical protein, at 831,928 to 832,356
_RS24510
RR42_RS24515: RR42_RS24515 - hypothetical protein, at 832,353 to 833,003
_RS24515
RR42_RS24520: RR42_RS24520 - hypothetical protein, at 833,000 to 833,551
_RS24520
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.111 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.399 kb on + strand, within RR42_RS24505 at 831.425 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.445 kb on - strand, within RR42_RS24505 at 831.529 kb on - strand, within RR42_RS24505 at 831.570 kb on + strand, within RR42_RS24505 at 831.623 kb on + strand, within RR42_RS24505 at 831.750 kb on + strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.764 kb on + strand at 831.767 kb on + strand at 831.767 kb on + strand at 831.768 kb on - strand at 831.768 kb on - strand at 831.817 kb on - strand at 831.933 kb on + strand at 831.934 kb on - strand at 832.212 kb on + strand, within RR42_RS24510 at 832.213 kb on - strand, within RR42_RS24510 at 832.670 kb on + strand, within RR42_RS24515 at 832.671 kb on - strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.793 kb on - strand, within RR42_RS24515 at 833.035 kb on - strand at 833.035 kb on - strand at 833.035 kb on - strand at 833.052 kb on + strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.194 kb on - strand, within RR42_RS24520 at 833.194 kb on - strand, within RR42_RS24520 at 833.280 kb on + strand, within RR42_RS24520 at 833.281 kb on - strand, within RR42_RS24520
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 831,111 - RR42_RS24505 0.51 +0.5 831,214 - RR42_RS24505 0.57 +0.1 831,214 - RR42_RS24505 0.57 -0.2 831,399 + RR42_RS24505 0.69 -0.2 831,425 + RR42_RS24505 0.70 +0.3 831,444 + RR42_RS24505 0.71 -0.6 831,444 + RR42_RS24505 0.71 -0.9 831,445 - RR42_RS24505 0.71 -1.3 831,529 - RR42_RS24505 0.76 -0.1 831,570 + RR42_RS24505 0.79 +1.0 831,623 + RR42_RS24505 0.82 +0.4 831,750 + RR42_RS24505 0.90 -1.9 831,751 - RR42_RS24505 0.90 +0.0 831,751 - RR42_RS24505 0.90 -0.5 831,764 + +0.4 831,767 + +0.7 831,767 + -0.8 831,768 - -1.2 831,768 - +0.5 831,817 - +0.5 831,933 + +0.0 831,934 - -0.5 832,212 + RR42_RS24510 0.66 -0.0 832,213 - RR42_RS24510 0.66 -1.7 832,670 + RR42_RS24515 0.49 -0.0 832,671 - RR42_RS24515 0.49 -0.4 832,756 + RR42_RS24515 0.62 -0.5 832,756 + RR42_RS24515 0.62 +0.1 832,793 - RR42_RS24515 0.68 +0.0 833,035 - +2.5 833,035 - -0.5 833,035 - +2.3 833,052 + +1.9 833,053 - +1.8 833,053 - +0.3 833,053 - +0.3 833,053 - +1.3 833,194 - RR42_RS24520 0.35 +0.5 833,194 - RR42_RS24520 0.35 +1.4 833,280 + RR42_RS24520 0.51 -1.6 833,281 - RR42_RS24520 0.51 +0.1
Or see this region's nucleotide sequence