Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24455 and RR42_RS24460 are separated by 438 nucleotides
RR42_RS24455: RR42_RS24455 - hypothetical protein, at 820,402 to 821,430
_RS24455
RR42_RS24460: RR42_RS24460 - hypothetical protein, at 821,869 to 822,363
_RS24460
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.931 kb on - strand, within RR42_RS24455 at 820.932 kb on + strand, within RR42_RS24455 at 820.933 kb on - strand, within RR42_RS24455 at 820.972 kb on + strand, within RR42_RS24455 at 821.068 kb on + strand, within RR42_RS24455 at 821.069 kb on - strand, within RR42_RS24455 at 821.069 kb on - strand, within RR42_RS24455 at 821.096 kb on + strand, within RR42_RS24455 at 821.096 kb on + strand, within RR42_RS24455 at 821.097 kb on - strand, within RR42_RS24455 at 821.103 kb on - strand, within RR42_RS24455 at 821.123 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.152 kb on - strand, within RR42_RS24455 at 821.152 kb on - strand, within RR42_RS24455 at 821.224 kb on + strand, within RR42_RS24455 at 821.349 kb on + strand at 821.349 kb on + strand at 821.349 kb on + strand at 821.350 kb on - strand at 821.490 kb on - strand at 821.512 kb on + strand at 821.513 kb on - strand at 821.523 kb on + strand at 821.524 kb on - strand at 821.598 kb on + strand at 821.598 kb on + strand at 821.599 kb on - strand at 821.599 kb on - strand at 821.715 kb on + strand at 821.716 kb on - strand at 821.752 kb on - strand at 821.752 kb on - strand at 821.752 kb on - strand at 821.771 kb on - strand at 821.771 kb on - strand at 822.169 kb on + strand, within RR42_RS24460 at 822.185 kb on - strand, within RR42_RS24460 at 822.217 kb on + strand, within RR42_RS24460 at 822.218 kb on - strand, within RR42_RS24460 at 822.320 kb on + strand at 822.354 kb on + strand at 822.363 kb on + strand at 822.364 kb on - strand at 822.407 kb on + strand at 822.407 kb on + strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.426 kb on - strand at 822.584 kb on - strand at 822.808 kb on - strand at 822.808 kb on - strand at 822.914 kb on + strand at 822.944 kb on - strand at 823.041 kb on + strand at 823.188 kb on + strand at 823.188 kb on + strand at 823.189 kb on - strand at 823.189 kb on - strand at 823.343 kb on + strand at 823.343 kb on + strand at 823.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 820,931 - RR42_RS24455 0.51 -0.4 820,932 + RR42_RS24455 0.52 +0.2 820,933 - RR42_RS24455 0.52 -0.2 820,972 + RR42_RS24455 0.55 +0.6 821,068 + RR42_RS24455 0.65 +0.6 821,069 - RR42_RS24455 0.65 -0.5 821,069 - RR42_RS24455 0.65 +0.1 821,096 + RR42_RS24455 0.67 +0.3 821,096 + RR42_RS24455 0.67 -0.4 821,097 - RR42_RS24455 0.68 +0.3 821,103 - RR42_RS24455 0.68 +0.6 821,123 + RR42_RS24455 0.70 -1.1 821,151 + RR42_RS24455 0.73 +1.6 821,151 + RR42_RS24455 0.73 -0.2 821,151 + RR42_RS24455 0.73 +0.7 821,151 + RR42_RS24455 0.73 +0.1 821,151 + RR42_RS24455 0.73 +0.4 821,152 - RR42_RS24455 0.73 +0.5 821,152 - RR42_RS24455 0.73 +0.2 821,224 + RR42_RS24455 0.80 +0.3 821,349 + +0.0 821,349 + +0.5 821,349 + +0.4 821,350 - +1.0 821,490 - -0.6 821,512 + -0.0 821,513 - -0.9 821,523 + +1.8 821,524 - -0.6 821,598 + -0.9 821,598 + +0.0 821,599 - +0.9 821,599 - +0.4 821,715 + +0.1 821,716 - -0.7 821,752 - +0.4 821,752 - +0.0 821,752 - -0.1 821,771 - -1.4 821,771 - -0.1 822,169 + RR42_RS24460 0.61 -0.5 822,185 - RR42_RS24460 0.64 -1.3 822,217 + RR42_RS24460 0.70 +0.1 822,218 - RR42_RS24460 0.71 -1.2 822,320 + +0.1 822,354 + +0.8 822,363 + +0.1 822,364 - +0.4 822,407 + -0.1 822,407 + +0.3 822,408 - +0.3 822,408 - -1.2 822,408 - -2.0 822,408 - +0.0 822,408 - -1.5 822,426 - -0.7 822,584 - -0.4 822,808 - -1.4 822,808 - -0.7 822,914 + -0.1 822,944 - -0.4 823,041 + -0.4 823,188 + +0.3 823,188 + +1.3 823,189 - -0.3 823,189 - -0.6 823,343 + -0.4 823,343 + -0.0 823,344 - +0.6
Or see this region's nucleotide sequence