Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21435

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
137,839	+		RR42_RS21430	0.66	-0.4
137,839	+		RR42_RS21430	0.66	-0.2
137,839	+		RR42_RS21430	0.66	-0.2
137,839	+		RR42_RS21430	0.66	+0.6
137,839	+		RR42_RS21430	0.66	+0.1
137,839	+		RR42_RS21430	0.66	+0.6
137,840	-		RR42_RS21430	0.66	-0.3
137,840	-		RR42_RS21430	0.66	+0.3
137,840	-		RR42_RS21430	0.66	+1.1
137,840	-		RR42_RS21430	0.66	-0.2
137,841	+		RR42_RS21430	0.66	+0.2
137,841	+		RR42_RS21430	0.66	-0.9
137,841	+		RR42_RS21430	0.66	-0.7
137,841	+		RR42_RS21430	0.66	+1.4
137,841	+		RR42_RS21430	0.66	+0.5
137,841	+		RR42_RS21430	0.66	-0.3
137,842	-		RR42_RS21430	0.66	-0.0
137,842	-		RR42_RS21430	0.66	-0.1
137,842	-		RR42_RS21430	0.66	-0.6
137,842	-		RR42_RS21430	0.66	+0.1
137,842	-		RR42_RS21430	0.66	+0.1
137,860	-		RR42_RS21430	0.67	+0.4
137,937	+		RR42_RS21430	0.73	-0.3
137,937	+		RR42_RS21430	0.73	+1.0
137,938	-		RR42_RS21430	0.73	+0.2
137,938	-		RR42_RS21430	0.73	-0.6
138,144	+		RR42_RS21430	0.89	+0.5
138,169	-				-1.6
138,169	-				-0.3
138,220	-				-0.2
138,321	+				+1.1
138,321	+				-0.5
138,322	-				+0.6
138,362	+				+0.4
138,363	-				+0.3
138,409	+				+0.4
138,409	+				-1.1
138,410	-				-1.7
138,410	-				+0.5
138,410	-				-0.6
138,410	-				-1.0
138,594	+				-0.4
138,594	+				+0.1
138,595	-				+0.4
138,595	-				-0.2
138,662	+				+0.6
138,693	+		RR42_RS21435	0.16	-0.2
138,771	+		RR42_RS21435	0.36	-1.4
138,933	+		RR42_RS21435	0.78	-0.0
138,933	+		RR42_RS21435	0.78	-0.7
138,997	+				-0.1
138,998	-				-0.8
138,998	-				-0.4
139,026	+				+0.4
139,026	+				+0.1
139,026	+				-0.4
139,026	+				+1.4
139,026	+				-0.4
139,027	-				-0.1
139,027	-				+0.6
139,027	-				+1.4
139,027	-				-0.6
139,027	-				-0.6
139,029	-				-0.9
139,029	-				-0.1
139,029	-				+1.8
139,038	+				+0.0
139,051	+				-0.6
139,101	+				-0.2
139,101	+				-0.1
139,101	+				+0.4
139,102	-				+0.3
139,102	-				+0.5
139,154	+				-0.9
139,154	+				+0.6
139,154	+				-0.2
139,154	+				+0.2
139,155	-				-2.2
139,155	-				+0.8
139,155	-				-0.5
139,232	+				-1.4
139,232	+				-0.6
139,281	+				-1.2
139,281	+				+0.1
139,281	+				-0.8
139,282	-				+0.7
139,289	+				-0.4
139,289	+				+0.0
139,289	+				-0.2
139,289	+				+0.1
139,290	-				-0.6
139,290	-				+0.8
139,290	-				+1.5
139,290	-				+0.4
139,290	-				-0.3
139,357	+				+1.1
139,357	+				-0.3
139,358	-				+0.5
139,368	+				+0.1
139,368	+				+0.7
139,368	+				+0.4
139,369	-				+0.4
139,403	+				+0.6
139,403	+				+1.4
139,403	+				-0.0
139,404	-				+0.3
139,404	-				-0.3
139,404	-				-0.6
139,647	+		RR42_RS21440	0.15	+0.4
139,647	+		RR42_RS21440	0.15	-1.6
139,648	-		RR42_RS21440	0.15	-0.6
139,648	-		RR42_RS21440	0.15	+1.0
139,648	-		RR42_RS21440	0.15	-0.9
139,648	-		RR42_RS21440	0.15	+0.2
139,648	-		RR42_RS21440	0.15	+0.2
139,648	-		RR42_RS21440	0.15	+0.7
139,785	+		RR42_RS21440	0.19	+0.6
139,785	+		RR42_RS21440	0.19	-0.4
139,785	+		RR42_RS21440	0.19	-2.0
139,786	-		RR42_RS21440	0.19	+0.7
139,786	-		RR42_RS21440	0.19	+1.0
139,786	-		RR42_RS21440	0.19	-0.2