Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21035 and RR42_RS21040 are separated by 67 nucleotides RR42_RS21040 and RR42_RS21045 are separated by 652 nucleotides RR42_RS21045 and RR42_RS21050 are separated by 125 nucleotides RR42_RS21050 and RR42_RS21055 are separated by 123 nucleotides
RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408
_RS21035
RR42_RS21040: RR42_RS21040 - hypothetical protein, at 46,476 to 46,667
_RS21040
RR42_RS21045: RR42_RS21045 - cyanate hydratase, at 47,320 to 47,763
_RS21045
RR42_RS21050: RR42_RS21050 - hypothetical protein, at 47,889 to 48,107
_RS21050
RR42_RS21055: RR42_RS21055 - excisionase, at 48,231 to 48,836
_RS21055
Position (kb) 47
48 Strain fitness (log2 ratio) -2
-1
0
1 at 46.363 kb on - strand at 46.633 kb on + strand, within RR42_RS21040 at 46.724 kb on - strand at 46.736 kb on - strand at 46.736 kb on - strand at 46.908 kb on - strand at 47.173 kb on + strand at 47.174 kb on - strand at 47.174 kb on - strand at 47.335 kb on - strand at 47.533 kb on + strand, within RR42_RS21045 at 47.533 kb on + strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.749 kb on + strand at 47.758 kb on + strand at 47.863 kb on - strand at 48.042 kb on + strand, within RR42_RS21050 at 48.043 kb on - strand, within RR42_RS21050 at 48.071 kb on + strand, within RR42_RS21050 at 48.072 kb on - strand, within RR42_RS21050 at 48.072 kb on - strand, within RR42_RS21050 at 48.140 kb on + strand at 48.184 kb on + strand at 48.185 kb on - strand at 48.232 kb on + strand at 48.317 kb on + strand, within RR42_RS21055 at 48.318 kb on - strand, within RR42_RS21055 at 48.509 kb on - strand, within RR42_RS21055 at 48.607 kb on - strand, within RR42_RS21055
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 46,363 - -1.0 46,633 + RR42_RS21040 0.82 -0.9 46,724 - +0.9 46,736 - -0.2 46,736 - +1.1 46,908 - -0.4 47,173 + +0.4 47,174 - -0.5 47,174 - -1.2 47,335 - -0.7 47,533 + RR42_RS21045 0.48 +0.9 47,533 + RR42_RS21045 0.48 -0.9 47,534 - RR42_RS21045 0.48 -0.2 47,534 - RR42_RS21045 0.48 -0.3 47,587 + RR42_RS21045 0.60 -0.3 47,587 + RR42_RS21045 0.60 -1.8 47,587 + RR42_RS21045 0.60 -0.6 47,587 + RR42_RS21045 0.60 -1.0 47,587 + RR42_RS21045 0.60 -0.1 47,588 - RR42_RS21045 0.60 -0.3 47,588 - RR42_RS21045 0.60 -0.4 47,588 - RR42_RS21045 0.60 -0.3 47,606 - RR42_RS21045 0.64 +0.4 47,606 - RR42_RS21045 0.64 -1.2 47,606 - RR42_RS21045 0.64 +1.4 47,749 + -1.0 47,758 + -1.3 47,863 - +0.2 48,042 + RR42_RS21050 0.70 -0.1 48,043 - RR42_RS21050 0.70 -0.2 48,071 + RR42_RS21050 0.83 +0.8 48,072 - RR42_RS21050 0.84 +0.2 48,072 - RR42_RS21050 0.84 +0.7 48,140 + +0.1 48,184 + -0.4 48,185 - +0.4 48,232 + +0.0 48,317 + RR42_RS21055 0.14 -0.1 48,318 - RR42_RS21055 0.14 +1.0 48,509 - RR42_RS21055 0.46 -0.1 48,607 - RR42_RS21055 0.62 +0.4
Or see this region's nucleotide sequence