Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20255

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
4,381,217	+		RR42_RS20250	0.56	-1.3
4,381,217	+		RR42_RS20250	0.56	-0.1
4,381,217	+		RR42_RS20250	0.56	-0.0
4,381,218	-		RR42_RS20250	0.56	+0.2
4,381,218	-		RR42_RS20250	0.56	+0.6
4,381,236	+		RR42_RS20250	0.58	-0.4
4,381,450	+		RR42_RS20250	0.77	-0.4
4,381,450	+		RR42_RS20250	0.77	-0.3
4,381,450	+		RR42_RS20250	0.77	+0.3
4,381,451	-		RR42_RS20250	0.77	-0.4
4,381,451	-		RR42_RS20250	0.77	+0.5
4,381,451	-		RR42_RS20250	0.77	-0.7
4,381,451	-		RR42_RS20250	0.77	-2.2
4,381,535	+		RR42_RS20250	0.84	+0.2
4,381,536	-		RR42_RS20250	0.84	+0.0
4,381,633	+				+0.2
4,381,634	-				+2.9
4,381,824	+				-0.4
4,381,824	+				-0.9
4,381,824	+				+1.6
4,381,825	-				-0.6
4,381,825	-				-0.1
4,381,916	+				+2.2
4,382,051	-				+0.0
4,382,051	-				+0.4
4,382,062	+				-0.3
4,382,256	-		RR42_RS20255	0.17	-1.9
4,382,277	+		RR42_RS20255	0.20	-0.4
4,382,277	+		RR42_RS20255	0.20	-0.5
4,382,278	-		RR42_RS20255	0.20	-0.4
4,382,446	+		RR42_RS20255	0.42	+0.6
4,382,446	+		RR42_RS20255	0.42	-0.6
4,382,446	+		RR42_RS20255	0.42	+0.1
4,382,546	+		RR42_RS20255	0.55	-0.1
4,382,546	+		RR42_RS20255	0.55	+1.0
4,382,546	+		RR42_RS20255	0.55	+0.3
4,382,547	-		RR42_RS20255	0.55	+0.7
4,382,547	-		RR42_RS20255	0.55	-0.5
4,382,547	-		RR42_RS20255	0.55	-0.7
4,382,549	-		RR42_RS20255	0.56	-1.0
4,382,549	-		RR42_RS20255	0.56	-1.3
4,382,571	-		RR42_RS20255	0.58	+1.7
4,382,571	-		RR42_RS20255	0.58	-0.3
4,382,621	-		RR42_RS20255	0.65	-1.2
4,382,680	+		RR42_RS20255	0.73	+0.1
4,382,680	+		RR42_RS20255	0.73	+1.3
4,382,681	-		RR42_RS20255	0.73	-0.3
4,382,681	-		RR42_RS20255	0.73	-1.2
4,382,681	-		RR42_RS20255	0.73	+0.1
4,382,681	-		RR42_RS20255	0.73	-0.6
4,382,701	+		RR42_RS20255	0.76	-0.3
4,382,724	-		RR42_RS20255	0.79	-1.8
4,382,724	-		RR42_RS20255	0.79	+0.3
4,382,724	-		RR42_RS20255	0.79	+0.1
4,382,724	-		RR42_RS20255	0.79	+0.4
4,382,724	-		RR42_RS20255	0.79	-0.5
4,382,976	+				+0.7
4,382,976	+				+0.1
4,382,977	-				-0.4
4,383,226	-		RR42_RS20260	0.47	+0.2
4,383,420	+		RR42_RS20260	0.82	-1.0
4,383,420	+		RR42_RS20260	0.82	-0.5
4,383,421	-		RR42_RS20260	0.82	-0.6
4,383,582	+				-1.2
4,383,583	-				-0.2
4,383,583	-				-1.2
4,383,634	+				+1.3
4,383,635	-				+0.5
4,383,635	-				-1.3
4,383,635	-				-0.0
4,383,635	-				+0.1
4,383,639	+				-0.6
4,383,639	+				+1.2
4,383,640	-				-0.1
4,383,641	+				-0.2
4,383,642	-				+0.5
4,383,642	-				-0.1
4,383,657	+				+0.3
4,383,657	+				+0.3
4,383,699	+				-0.2
4,383,700	-				+0.0
4,383,715	+				-0.6
4,383,715	+				+0.6
4,383,716	-				+0.2
4,383,718	-				+0.1
4,383,726	+				+0.7
4,383,726	+				+0.1
4,383,727	-				-0.1
4,383,727	-				-0.5
4,383,753	+				+0.7
4,383,859	+				-0.0
4,383,860	-				+0.8