Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20250

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
4,379,717	+		RR42_RS20245	0.58	+0.2
4,379,787	+		RR42_RS20245	0.65	+0.1
4,379,787	+		RR42_RS20245	0.65	+0.1
4,379,788	-		RR42_RS20245	0.65	-0.1
4,379,788	-		RR42_RS20245	0.65	-0.2
4,379,788	-		RR42_RS20245	0.65	+0.3
4,379,849	+		RR42_RS20245	0.71	+0.1
4,379,849	+		RR42_RS20245	0.71	-0.1
4,379,850	-		RR42_RS20245	0.71	+1.6
4,379,850	-		RR42_RS20245	0.71	+0.1
4,379,850	-		RR42_RS20245	0.71	+0.4
4,379,927	+		RR42_RS20245	0.78	+0.4
4,379,927	+		RR42_RS20245	0.78	-0.1
4,379,927	+		RR42_RS20245	0.78	+0.4
4,379,927	+		RR42_RS20245	0.78	-0.2
4,380,098	+				+0.6
4,380,098	+				-1.1
4,380,098	+				+0.4
4,380,099	-				-0.9
4,380,099	-				-0.7
4,380,099	-				-1.0
4,380,099	-				+0.3
4,380,167	+				+0.6
4,380,167	+				-0.1
4,380,232	-				-1.4
4,380,243	+				-0.3
4,380,243	+				-0.2
4,380,272	+				-0.2
4,380,272	+				+0.2
4,380,273	-				-0.2
4,380,295	+				+0.2
4,380,320	+				-0.8
4,380,320	+				-2.2
4,380,320	+				-0.2
4,380,320	+				+0.1
4,380,320	+				+0.2
4,380,320	+				-0.4
4,380,320	+				+0.7
4,380,320	+				-2.0
4,380,320	+				+0.2
4,380,320	+				-1.4
4,380,320	+				-0.0
4,380,320	+				-0.7
4,380,321	-				+0.1
4,380,321	-				+0.7
4,380,321	-				-0.4
4,380,321	-				+1.0
4,380,321	-				+2.3
4,380,321	-				-0.3
4,380,321	-				-0.4
4,380,321	-				-0.6
4,380,326	+				-0.7
4,380,327	-				+1.3
4,380,327	-				-0.2
4,380,327	-				+1.1
4,380,327	-				+0.1
4,380,343	-				-0.2
4,380,569	+				+0.2
4,380,569	+				-1.0
4,380,846	-		RR42_RS20250	0.24	+1.6
4,380,857	+		RR42_RS20250	0.25	+0.8
4,380,857	+		RR42_RS20250	0.25	+0.4
4,380,858	-		RR42_RS20250	0.25	+0.1
4,380,858	-		RR42_RS20250	0.25	-0.3
4,380,858	-		RR42_RS20250	0.25	-0.5
4,380,858	-		RR42_RS20250	0.25	-0.1
4,380,998	+		RR42_RS20250	0.37	-0.1
4,380,998	+		RR42_RS20250	0.37	+0.6
4,380,998	+		RR42_RS20250	0.37	-0.2
4,380,999	-		RR42_RS20250	0.37	-0.6
4,381,217	+		RR42_RS20250	0.56	-1.3
4,381,217	+		RR42_RS20250	0.56	-0.1
4,381,217	+		RR42_RS20250	0.56	-0.0
4,381,218	-		RR42_RS20250	0.56	+0.2
4,381,218	-		RR42_RS20250	0.56	+0.6
4,381,236	+		RR42_RS20250	0.58	-0.4
4,381,450	+		RR42_RS20250	0.77	-0.4
4,381,450	+		RR42_RS20250	0.77	-0.3
4,381,450	+		RR42_RS20250	0.77	+0.3
4,381,451	-		RR42_RS20250	0.77	-0.4
4,381,451	-		RR42_RS20250	0.77	+0.5
4,381,451	-		RR42_RS20250	0.77	-0.7
4,381,451	-		RR42_RS20250	0.77	-2.2
4,381,535	+		RR42_RS20250	0.84	+0.2
4,381,536	-		RR42_RS20250	0.84	+0.0
4,381,633	+				+0.2
4,381,634	-				+2.9
4,381,824	+				-0.4
4,381,824	+				-0.9
4,381,824	+				+1.6
4,381,825	-				-0.6
4,381,825	-				-0.1
4,381,916	+				+2.2
4,382,051	-				+0.0
4,382,051	-				+0.4
4,382,062	+				-0.3
4,382,256	-		RR42_RS20255	0.17	-1.9
4,382,277	+		RR42_RS20255	0.20	-0.4
4,382,277	+		RR42_RS20255	0.20	-0.5
4,382,278	-		RR42_RS20255	0.20	-0.4
4,382,446	+		RR42_RS20255	0.42	+0.6
4,382,446	+		RR42_RS20255	0.42	-0.6
4,382,446	+		RR42_RS20255	0.42	+0.1
4,382,546	+		RR42_RS20255	0.55	-0.1
4,382,546	+		RR42_RS20255	0.55	+1.0
4,382,546	+		RR42_RS20255	0.55	+0.3
4,382,547	-		RR42_RS20255	0.55	+0.7
4,382,547	-		RR42_RS20255	0.55	-0.5
4,382,547	-		RR42_RS20255	0.55	-0.7
4,382,549	-		RR42_RS20255	0.56	-1.0
4,382,549	-		RR42_RS20255	0.56	-1.3
4,382,571	-		RR42_RS20255	0.58	+1.7
4,382,571	-		RR42_RS20255	0.58	-0.3
4,382,621	-		RR42_RS20255	0.65	-1.2
4,382,680	+		RR42_RS20255	0.73	+0.1
4,382,680	+		RR42_RS20255	0.73	+1.3
4,382,681	-		RR42_RS20255	0.73	-0.3
4,382,681	-		RR42_RS20255	0.73	-1.2
4,382,681	-		RR42_RS20255	0.73	+0.1
4,382,681	-		RR42_RS20255	0.73	-0.6
4,382,701	+		RR42_RS20255	0.76	-0.3