Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17645

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,816,973	+		RR42_RS17635	0.87	-0.1
3,816,974	-		RR42_RS17635	0.87	-1.8
3,817,073	-				+0.8
3,817,073	-				+0.2
3,817,073	-				+0.7
3,817,207	+		RR42_RS17640	0.12	+0.3
3,817,207	+		RR42_RS17640	0.12	+0.1
3,817,207	+		RR42_RS17640	0.12	-0.7
3,817,207	+		RR42_RS17640	0.12	+0.2
3,817,207	+		RR42_RS17640	0.12	-1.4
3,817,207	+		RR42_RS17640	0.12	+0.2
3,817,208	-		RR42_RS17640	0.12	-0.7
3,817,208	-		RR42_RS17640	0.12	-0.2
3,817,300	+		RR42_RS17640	0.25	+0.0
3,817,300	+		RR42_RS17640	0.25	-2.0
3,817,301	-		RR42_RS17640	0.25	-0.2
3,817,301	-		RR42_RS17640	0.25	+2.0
3,817,301	-		RR42_RS17640	0.25	+0.5
3,817,360	+		RR42_RS17640	0.33	+1.5
3,817,361	-		RR42_RS17640	0.34	-0.1
3,817,361	-		RR42_RS17640	0.34	-0.2
3,817,373	+		RR42_RS17640	0.35	+0.2
3,817,373	+		RR42_RS17640	0.35	+0.1
3,817,373	+		RR42_RS17640	0.35	-0.5
3,817,373	+		RR42_RS17640	0.35	+0.1
3,817,374	-		RR42_RS17640	0.35	-1.0
3,817,374	-		RR42_RS17640	0.35	+0.5
3,817,374	-		RR42_RS17640	0.35	+0.0
3,817,439	-		RR42_RS17640	0.45	-0.1
3,817,439	-		RR42_RS17640	0.45	-0.0
3,817,508	+		RR42_RS17640	0.55	+2.0
3,817,508	+		RR42_RS17640	0.55	+0.1
3,817,508	+		RR42_RS17640	0.55	+0.2
3,817,508	+		RR42_RS17640	0.55	-0.1
3,817,509	-		RR42_RS17640	0.55	+0.1
3,817,628	+		RR42_RS17640	0.72	-0.4
3,817,628	+		RR42_RS17640	0.72	+0.4
3,817,629	-		RR42_RS17640	0.72	+0.1
3,817,629	-		RR42_RS17640	0.72	-0.3
3,817,629	-		RR42_RS17640	0.72	-0.3
3,817,629	-		RR42_RS17640	0.72	-0.3
3,817,636	+		RR42_RS17640	0.73	-0.9
3,817,637	-		RR42_RS17640	0.73	+0.4
3,817,765	+				-0.2
3,817,765	+				+0.1
3,817,765	+				-1.2
3,817,765	+				-0.4
3,817,766	-				-0.4
3,817,810	+				-0.6
3,818,001	+				-1.1
3,818,001	+				+0.6
3,818,001	+				-0.7
3,818,001	+				-0.4
3,818,002	-				-0.7
3,818,084	+		RR42_RS17645	0.19	-0.4
3,818,084	+		RR42_RS17645	0.19	-0.5
3,818,085	-		RR42_RS17645	0.19	-1.4
3,818,085	-		RR42_RS17645	0.19	+0.9
3,818,103	+		RR42_RS17645	0.21	-0.2
3,818,103	+		RR42_RS17645	0.21	-1.2
3,818,104	-		RR42_RS17645	0.21	-0.6
3,818,115	+		RR42_RS17645	0.22	-0.4
3,818,131	+		RR42_RS17645	0.24	-0.1
3,818,269	-		RR42_RS17645	0.40	-1.3
3,818,435	-		RR42_RS17645	0.59	-0.7
3,818,571	+		RR42_RS17645	0.74	-0.2
3,818,572	-		RR42_RS17645	0.75	+0.0
3,818,766	+				-0.8
3,818,794	+				+1.5
3,818,794	+				+0.0
3,818,794	+				-1.0
3,818,794	+				-0.4
3,818,794	+				+2.5
3,818,795	-				+0.5
3,818,795	-				+0.1
3,818,795	-				+0.1
3,818,795	-				-0.1
3,818,908	-		RR42_RS17650	0.10	+1.3
3,819,008	+		RR42_RS17650	0.21	-0.2
3,819,022	-		RR42_RS17650	0.23	-0.4
3,819,146	+		RR42_RS17650	0.36	-0.1
3,819,147	-		RR42_RS17650	0.36	-0.2
3,819,147	-		RR42_RS17650	0.36	+0.0
3,819,150	-		RR42_RS17650	0.37	-0.6
3,819,158	+		RR42_RS17650	0.38	+0.9
3,819,215	+		RR42_RS17650	0.44	-1.0
3,819,216	-		RR42_RS17650	0.44	+0.9